Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 3142.1 1743 100.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1305.4 1828 49.8
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1284.6 1730 48.0
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1267.7 1723 47.4
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1230.3 1734 47.0
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1230.3 1734 47.0
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1215.3 1757 46.5
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1202.6 1751 46.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1201.8 1732 45.3
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1183.7 1686 47.2
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1181.0 1774 46.8
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1176.8 1714 44.7
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1162.9 1746 46.1
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1160.2 1753 45.9
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1127.5 1718 44.2
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1117.4 1751 44.1
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1113.6 1725 42.8
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1085.5 1715 43.1
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.2e-309 1067.4 1787 43.0
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.5e-307 1059.7 1706 43.1
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 7.2e-299 1031.6 1708 44.0
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 4.6e-298 1028.9 1819 41.2
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 2.3e-297 1026.5 1716 42.8
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 5.5e-291 1005.4 1660 42.0
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 7.0e-286 988.4 1851 39.9
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 8.0e-282 974.9 1847 40.1
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.3e-279 967.6 1713 41.6
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.7e-276 957.2 1722 40.6
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 2.7e-274 949.9 1693 40.2
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 6.8e-273 945.3 1744 40.7
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.4e-270 937.6 1713 39.3
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.8e-270 937.2 1832 38.9
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 1.2e-269 934.5 1658 40.0
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 8.8e-265 918.3 1763 38.3
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 7.0e-262 908.7 1687 39.7
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 8.6e-260 901.7 1758 38.7
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.9e-259 900.6 1693 38.5
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.9e-259 900.6 1692 39.7
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 1.9e-259 900.6 1687 38.0
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 2.5e-259 900.2 1751 38.8
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.3e-257 893.6 1796 37.9
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 8.9e-257 891.7 1304 44.9
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.1e-254 884.8 1713 39.4
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.4e-254 884.4 1766 38.3
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.2e-254 881.7 1843 38.8
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 2.9e-252 876.7 1765 37.7
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 4.3e-251 872.8 1780 37.5
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.2e-250 871.3 1717 38.3
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 4.7e-250 869.4 1865 37.6
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.4e-246 857.8 1686 39.1
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-245 854.4 1766 39.1
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.7e-245 853.6 1772 37.6
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.3e-244 851.3 1711 37.7
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 6.6e-244 849.0 1774 37.6
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.5e-243 847.0 1690 39.4
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 3.1e-241 840.1 1673 38.6
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 3.7e-239 833.2 1721 37.7
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 8.3e-239 832.0 1669 38.1
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 8.3e-239 832.0 1677 37.8
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.3e-236 823.9 2098 33.7
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.0e-236 823.5 1793 36.8
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.5e-232 811.2 1700 36.9
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.7e-231 806.6 1789 35.4
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 4.9e-231 806.2 1771 36.1
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 3.1e-225 786.9 1706 36.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.3e-223 781.6 1605 38.6
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 1.1e-219 768.5 1158 42.5
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.5e-219 768.1 1673 37.1
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.3e-215 755.0 1662 36.5
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 9.3e-214 748.8 1682 36.1
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.3e-209 733.0 1730 34.6
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.9e-209 732.6 1686 33.9
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 2.6e-208 730.7 1672 35.2
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.8e-204 718.0 1752 34.5
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.9e-204 716.8 1671 35.7
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 5.6e-203 713.0 1761 35.2
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.3e-188 665.2 1486 36.6
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 7.4e-187 659.4 925 44.3
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.3e-186 656.4 1646 34.0
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 9.4e-174 615.9 1671 33.3
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.4e-169 601.3 1668 31.9
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 9.1e-169 599.4 999 45.8
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 7.7e-160 569.7 952 43.5
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.3e-159 568.9 1411 36.3
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.0e-156 559.3 1682 31.5
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.1e-153 549.3 1422 35.0
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.1e-153 549.3 1422 35.0
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.6e-149 534.3 679 45.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 3.4e-147 527.7 889 40.4
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.7e-122 444.5 891 42.0
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 6.0e-120 437.2 788 38.1
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 5.1e-111 407.5 433 48.7
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 6.2e-109 400.6 886 34.8
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.8e-100 372.5 915 36.8
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 4.2e-97 361.3 1048 29.5
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 8.7e-95 353.6 856 37.6
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.8e-92 345.9 930 34.3
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.9e-86 325.9 472 40.3
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-78 299.7 633 34.4
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 2.2e-74 285.8 642 39.1
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 2.1e-72 279.3 1660 25.6
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.3e-71 276.6 598 33.6
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.1e-70 273.5 1034 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 8.2e-69 267.3 1068 26.8
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 2.2e-66 259.2 816 33.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.3e-63 249.2 638 36.2
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.7e-63 247.7 728 32.7
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 3.3e-62 245.4 1731 24.6
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 3.3e-62 245.4 238 50.4
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.0e-59 236.1 464 37.7
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.9e-55 221.9 166 69.9
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.0e-54 219.5 241 48.5
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.1e-52 213.8 381 39.6
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 2.9e-50 205.7 653 33.2
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 5.5e-49 201.4 146 61.0
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 9.4e-49 200.7 237 43.0
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.0e-47 197.2 194 54.1
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.0e-47 195.7 244 50.4
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.8e-44 186.4 982 28.4
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.0e-42 180.6 190 48.4
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.5e-42 177.9 191 51.8
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 8.8e-39 167.5 255 47.1
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 5.4e-36 158.3 670 30.7
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 8.5e-34 151.0 671 29.1
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.1e-33 150.6 134 63.4
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.6e-32 146.7 197 45.7
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.5e-30 137.9 94 64.9
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.2e-27 130.6 144 53.5
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.6e-26 124.8 221 38.5
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 8.6e-26 124.4 374 30.2
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 2.5e-25 122.9 158 39.9
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.2e-24 120.6 241 35.7
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 8.9e-23 114.4 477 24.1
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 1.5e-22 113.6 79 67.1
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.6e-17 95.1 79 57.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 7.3e-17 94.7 79 57.0
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 8.0e-16 91.3 115 55.7
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.2e-15 88.6 115 37.4
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.8e-15 88.2 63 61.9
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 8.9e-15 87.8 61 62.3
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 1.2e-14 87.4 337 35.0
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 2.0e-14 86.7 304 31.6
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.7e-13 82.4 78 53.8
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 8.3e-13 81.3 130 36.2
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.5e-09 70.5 348 25.0
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.2e-08 67.4 253 30.8
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 8.9e-07 61.2 142 31.7
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 2.6e-06 59.7 70 42.9
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 3.4e-06 59.3 60 53.3
Sopen01g019210 Solanum pennellii HOM05D004493 ORTHO05D005117 3.4e-06 59.3 69 49.3
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 4.4e-06 58.9 304 28.9
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.8e-06 58.5 47 55.3


User provided reference genes

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