Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 2.3e-290 1001.5 496 100.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 4.8e-256 887.5 496 86.9
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.8e-255 885.6 496 85.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 4.0e-255 884.4 493 87.2
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 4.0e-255 884.4 496 86.3
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 5.8e-254 880.6 489 87.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 5.8e-254 880.6 496 85.7
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.4e-252 875.2 496 85.9
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.2e-252 874.8 496 86.5
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.6e-251 872.5 496 85.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.5e-251 871.3 496 84.7
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 6.0e-251 870.5 496 85.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.7e-250 869.0 494 85.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.3e-250 868.6 496 84.9
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.3e-250 868.6 496 85.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.0e-250 868.2 496 85.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 3.0e-250 868.2 494 85.2
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 3.9e-250 867.8 496 84.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.9e-250 867.8 496 85.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.7e-250 866.7 496 85.1
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.6e-249 864.0 496 84.9
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 7.4e-249 863.6 493 84.6
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.6e-248 862.4 494 85.0
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.1e-247 859.8 494 85.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.4e-247 859.4 493 85.2
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 2.4e-247 858.6 496 84.5
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 5.3e-247 857.4 494 85.0
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.5e-246 855.9 498 83.7
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.0e-246 855.5 493 84.6
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 3.4e-246 854.7 496 82.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 7.6e-246 853.6 496 83.9
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.7e-245 852.4 534 79.0
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 3.8e-245 851.3 494 82.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 6.4e-245 850.5 494 83.6
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 8.4e-245 850.1 494 84.6
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 5.5e-244 847.4 493 83.2
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 7.1e-244 847.0 494 84.0
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 9.3e-244 846.7 494 84.0
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.2e-243 846.3 496 83.1
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.1e-243 845.5 494 84.0
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.1e-243 845.5 526 80.2
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.1e-243 845.5 492 83.7
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.7e-243 845.1 487 84.2
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.7e-243 845.1 496 83.5
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.6e-243 844.3 496 83.5
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 7.9e-243 843.6 496 82.5
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 7.9e-243 843.6 492 83.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.0e-242 843.2 494 82.4
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.3e-242 842.0 492 83.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.7e-242 840.5 493 82.4
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 6.7e-242 840.5 496 81.2
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.7e-242 840.1 496 83.1
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 8.7e-242 840.1 492 83.3
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 8.7e-242 840.1 493 82.6
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.5e-241 838.6 499 81.4
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 7.4e-241 837.0 495 82.2
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 7.4e-241 837.0 493 81.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 9.6e-241 836.6 488 83.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 9.6e-241 836.6 495 82.4
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 9.6e-241 836.6 496 82.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-240 836.3 496 82.3
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 4.8e-240 834.3 477 83.6
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.8e-239 832.4 496 80.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.1e-239 831.6 495 81.4
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.1e-239 831.6 480 83.3
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.0e-239 831.2 494 81.6
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.3e-239 830.9 503 81.3
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.0e-239 830.1 496 82.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 9.0e-239 830.1 494 81.6
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.2e-238 829.7 496 81.5
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 7.6e-238 827.0 492 81.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.7e-237 825.9 507 80.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 3.8e-237 824.7 489 81.8
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 3.8e-237 824.7 498 80.7
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 8.4e-237 823.5 498 81.3
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 5.5e-236 820.8 502 79.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.5e-236 820.8 497 79.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 5.5e-236 820.8 499 80.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.6e-235 819.3 493 80.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.5e-235 818.1 493 80.7
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.8e-234 815.8 493 80.3
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 5.1e-234 814.3 494 80.4
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.1e-233 813.1 492 80.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.5e-233 812.8 492 80.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.3e-233 811.6 493 80.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.3e-233 811.2 493 80.3
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 5.7e-233 810.8 493 80.5
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.6e-232 809.3 492 80.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-232 808.1 494 80.0
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 3.7e-232 808.1 490 80.6
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-231 806.6 492 80.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.4e-231 805.4 490 79.4
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.4e-231 805.4 500 79.2
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 2.4e-231 805.4 497 79.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 4.1e-231 804.7 496 78.0
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.0e-230 802.4 495 79.8
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 4.5e-230 801.2 496 77.6
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.8e-229 798.1 490 79.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.0e-226 790.0 494 78.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 1.3e-221 773.1 438 86.1
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.9e-220 769.2 512 74.0
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.2e-220 768.5 485 77.5
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.9e-218 761.5 444 84.0
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.7e-216 755.0 444 80.9
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.5e-214 749.6 490 75.1
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.5e-214 749.6 492 74.8
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.4e-214 748.4 451 80.3
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.3e-210 735.7 445 80.9
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.1e-209 733.4 498 72.3
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 8.2e-208 727.2 440 80.5
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.9e-206 721.1 441 81.0
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 6.7e-202 707.6 487 70.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 6.3e-200 701.0 389 87.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.9e-197 692.2 486 70.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 8.8e-194 680.6 490 67.6
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.0e-189 664.8 491 68.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 3.2e-188 662.1 384 84.4
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 7.2e-188 661.0 496 68.3
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.3e-186 656.0 482 69.7
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.3e-186 656.0 405 78.0
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.8e-183 646.4 499 67.9
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.3e-178 629.4 386 80.6
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.7e-176 622.1 514 61.3
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 5.8e-169 598.2 391 77.7
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.4e-167 592.8 382 78.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 7.3e-164 581.3 462 67.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 9.5e-164 580.9 348 81.6
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.2e-145 520.8 531 50.5
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.1e-135 485.0 268 88.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.5e-121 440.7 610 42.6
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 2.1e-115 420.2 238 84.5
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.2e-111 406.0 238 81.1
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.3e-109 401.0 301 67.1
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.3e-108 396.0 228 86.0
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 1.3e-104 384.4 253 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 8.5e-104 381.7 433 50.3
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-103 381.3 481 46.4
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 9.4e-103 378.3 238 75.2
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.8e-96 356.3 303 65.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-94 348.6 313 60.4
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.9e-93 346.3 237 73.0
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.6e-89 334.3 237 69.6
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 4.1e-82 309.7 254 66.1
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-64 251.5 159 76.7
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 6.4e-59 232.6 150 73.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.7e-57 227.3 261 51.0
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 7.5e-52 209.1 299 44.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 6.2e-46 189.5 146 63.0
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.2e-44 185.3 99 88.9
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.6e-44 184.1 151 66.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 9.9e-44 182.2 103 84.5
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 1.6e-41 174.9 104 79.8
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 3.9e-40 170.2 122 67.2
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.2e-38 165.2 141 62.4
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 7.6e-36 156.0 161 52.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.3e-32 144.4 75 89.3
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.6e-30 138.3 79 82.3
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 2.0e-28 131.3 85 75.3
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 4.9e-19 100.1 73 67.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.2e-18 97.4 93 55.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.1e-13 82.4 61 72.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 8.4e-11 72.8 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 8.7e-08 62.8 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 1.3e-06 58.9 38 76.3


User provided reference genes

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