Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.7e-155 551.2 286 100.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.5e-149 530.4 288 96.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 4.1e-103 378.6 293 65.2
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.6e-99 365.5 288 66.0
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.8e-98 363.2 287 63.4
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 8.9e-98 360.9 288 63.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 8.9e-98 360.9 287 63.4
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.3e-96 357.1 282 63.5
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.7e-96 356.7 287 62.7
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 4.9e-96 355.1 283 62.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 4.9e-96 355.1 288 63.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.4e-95 352.8 288 63.2
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.1e-95 352.1 251 69.3
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 9.2e-95 350.9 284 62.7
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 6.0e-94 348.2 301 61.1
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 7.8e-94 347.8 287 61.3
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.3e-93 347.1 272 64.3
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 5.1e-93 345.1 286 61.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.5e-92 343.6 285 62.8
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.9e-92 343.2 282 61.0
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 3.3e-92 342.4 283 61.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 4.7e-91 338.6 291 58.8
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.2e-91 338.2 278 61.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.1e-91 337.8 283 60.8
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.4e-90 336.3 281 60.9
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.1e-90 335.9 277 58.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.2e-90 335.1 272 61.0
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.6e-89 332.8 296 57.1
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.4e-89 332.4 282 58.2
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.4e-89 332.0 272 60.7
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 9.9e-89 330.9 282 59.6
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.3e-88 330.5 261 62.5
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.7e-88 330.1 286 55.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.2e-88 329.7 284 59.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.2e-88 329.7 251 63.7
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.9e-88 328.6 254 64.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.4e-87 327.0 282 58.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.2e-87 325.9 277 59.6
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.2e-87 325.9 283 59.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 7.1e-87 324.7 293 56.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.6e-86 322.0 298 55.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.6e-86 322.0 292 56.2
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 8.7e-85 317.8 292 53.8
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.1e-84 317.4 250 60.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.6e-84 315.1 266 59.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.6e-83 313.5 285 54.7
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 6.2e-83 311.6 271 56.8
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.4e-82 310.5 268 58.2
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 3.1e-82 309.3 272 57.4
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.1e-82 309.3 261 59.4
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.5e-81 307.0 251 58.2
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.5e-81 307.0 313 50.2
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.0e-81 306.6 293 54.6
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.6e-81 306.2 249 63.9
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.4e-81 305.8 286 54.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 9.9e-81 304.3 286 53.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 9.9e-81 304.3 256 58.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.3e-80 303.9 256 58.6
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.9e-80 302.8 295 52.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.8e-80 302.4 285 54.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.4e-79 298.5 286 52.8
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 5.4e-79 298.5 262 58.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.1e-79 298.1 304 51.6
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.2e-78 297.4 304 49.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.9e-78 294.7 285 51.9
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.0e-77 294.3 290 54.8
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.3e-77 293.9 266 55.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.0e-77 292.7 273 53.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 3.9e-77 292.4 287 52.3
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 5.1e-77 292.0 289 51.2
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.7e-77 291.2 289 51.9
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 8.7e-77 291.2 289 51.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 8.7e-77 291.2 295 48.5
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.6e-75 287.0 305 49.2
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.6e-75 287.0 284 53.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.6e-75 287.0 278 54.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.8e-75 286.2 269 53.5
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.4e-74 283.9 309 49.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 9.0e-74 281.2 289 52.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.2e-73 280.8 341 46.0
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.2e-73 280.8 244 56.1
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-73 280.4 252 56.7
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.0e-73 280.0 293 50.5
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.6e-73 279.6 299 49.5
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-73 279.6 410 39.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.9e-73 277.7 257 54.1
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 6.4e-72 275.0 256 55.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.4e-71 273.1 245 55.9
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.2e-71 272.7 337 43.3
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.6e-70 270.4 285 50.9
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.5e-70 269.2 280 51.1
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.6e-70 268.9 289 48.4
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.3e-69 267.3 283 47.7
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.9e-69 265.8 282 49.3
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-68 264.2 289 49.1
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.5e-68 263.8 288 49.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 5.6e-68 261.9 181 71.3
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.4e-68 261.5 288 49.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-67 260.4 290 48.3
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-66 257.7 288 48.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-66 257.3 291 49.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 5.8e-65 251.9 341 40.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.7e-64 250.4 251 49.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.8e-64 249.2 251 49.8
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.7e-62 243.0 283 47.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 7.9e-62 241.5 252 45.2
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.8e-61 240.4 252 44.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.8e-61 240.4 252 44.4
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.6e-59 233.8 212 55.7
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-59 233.4 208 56.2
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.9e-58 228.4 282 41.8
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 2.9e-56 223.0 174 62.1
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-55 221.1 239 49.8
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.1e-54 216.9 285 42.5
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.3e-53 214.2 251 48.6
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 5.1e-53 212.2 174 60.3
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 6.9e-50 201.8 209 52.6
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.9e-47 193.7 259 48.3
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.2e-47 193.0 140 66.4
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.1e-46 188.7 174 55.7
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 9.7e-44 181.4 282 41.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.1e-42 174.9 183 49.2
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-41 174.5 180 52.2
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-41 174.5 251 41.0
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 6.5e-40 168.7 162 50.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.7e-38 163.3 343 32.9
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 6.1e-38 162.2 179 47.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.9e-37 159.5 181 51.4
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.0e-36 157.1 286 33.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.7e-36 154.8 124 62.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.1e-34 149.8 423 30.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 4.1e-34 149.4 103 67.0
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.6e-33 146.7 128 53.1
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.5e-33 146.0 178 44.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.2e-30 137.9 195 41.5
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.1e-30 137.1 167 47.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 4.7e-30 136.0 283 31.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.5e-28 128.6 239 36.0
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.8e-26 124.0 204 36.8
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.5e-23 113.6 244 29.5
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.6e-22 110.9 107 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.3e-21 107.1 259 27.4
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.0e-21 106.3 86 60.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 5.7e-20 102.4 142 40.8
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 5.4e-18 95.9 261 29.9
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 3.5e-17 93.2 141 40.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 3.5e-17 93.2 141 40.4
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.9e-16 90.1 123 39.8
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.8e-16 89.7 65 67.7
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 8.5e-16 88.6 244 27.5
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 7.2e-15 85.5 93 50.5
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 3.0e-13 80.1 61 67.2
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.0e-12 77.4 66 56.1
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 7.5e-12 75.5 131 32.1
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.7e-11 74.3 101 39.6
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.3e-11 72.4 61 62.3
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 7.0e-10 68.9 101 39.6
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 9.2e-10 68.6 70 54.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 9.5e-07 58.5 39 61.5
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 1.6e-06 57.8 90 36.7
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 1.6e-06 57.8 90 36.7
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.1e-06 57.4 134 31.3


User provided reference genes

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