Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 7.8e-288 993.0 480 100.0
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 8.4e-258 893.3 477 88.1
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.6e-256 889.0 480 88.8
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.1e-256 888.6 480 87.5
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 6.0e-256 887.1 479 86.4
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.7e-255 885.6 478 88.5
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 5.1e-255 884.0 484 89.0
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 6.6e-255 883.6 481 87.7
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 4.3e-254 880.9 480 85.6
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 9.6e-254 879.8 478 87.9
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.6e-253 877.9 478 86.2
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 4.8e-253 877.5 479 85.6
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 4.8e-253 877.5 479 87.1
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.8e-253 877.5 480 87.3
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 8.1e-253 876.7 477 87.4
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.0e-252 874.4 484 85.1
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 5.3e-252 874.0 480 86.9
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.9e-252 873.6 478 86.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.6e-251 871.7 478 86.6
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 3.4e-251 871.3 483 86.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 3.4e-251 871.3 483 86.5
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 9.9e-251 869.8 475 86.9
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.4e-249 865.9 477 86.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.4e-249 865.9 478 85.6
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.4e-249 865.1 478 85.8
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.4e-249 864.0 473 85.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 1.6e-248 862.4 483 84.3
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 4.6e-248 860.9 477 84.7
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 4.6e-248 860.9 478 85.6
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.6e-248 860.9 485 84.9
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.0e-248 860.5 475 84.6
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 7.9e-248 860.1 478 86.8
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 3.0e-247 858.2 479 85.4
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.0e-247 858.2 475 84.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 5.1e-247 857.4 478 86.4
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 5.1e-247 857.4 477 83.6
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 6.7e-247 857.1 478 85.4
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 8.7e-247 856.7 480 85.4
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.1e-246 856.3 477 84.1
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.1e-246 856.3 478 85.6
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.6e-246 854.0 474 84.6
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 7.4e-246 853.6 496 82.1
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 7.4e-246 853.6 479 83.9
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.3e-245 852.8 480 83.3
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.1e-245 852.0 479 84.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.8e-245 850.9 477 82.8
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 8.1e-245 850.1 478 84.5
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.1e-244 849.7 478 83.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 2.4e-244 848.6 477 83.0
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.4e-244 848.6 485 83.7
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 4.0e-244 847.8 476 84.7
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 6.9e-244 847.0 486 83.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 6.9e-244 847.0 478 86.0
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.2e-243 846.3 480 84.6
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.5e-243 845.9 476 84.2
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.0e-243 845.5 478 82.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 2.0e-243 845.5 481 85.0
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 2.6e-243 845.1 478 84.5
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.6e-243 845.1 478 82.2
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.6e-243 845.1 483 83.9
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 3.4e-243 844.7 478 83.1
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 4.5e-243 844.3 478 82.6
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 4.5e-243 844.3 480 84.4
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 5.8e-243 844.0 480 84.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.3e-242 842.8 478 82.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.7e-242 842.4 478 81.8
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.7e-242 842.4 479 84.3
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.2e-242 842.0 445 89.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.9e-242 841.6 478 84.3
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 4.9e-242 840.9 479 82.3
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 8.4e-242 840.1 478 83.7
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.4e-241 839.3 478 82.0
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.9e-241 839.0 476 84.7
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 2.5e-241 838.6 471 83.0
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 4.2e-241 837.8 478 84.5
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 5.5e-241 837.4 478 82.0
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.6e-240 835.9 480 84.2
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.1e-240 835.5 486 81.1
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.1e-240 835.5 441 88.7
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.5e-240 834.7 493 81.3
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 6.0e-240 833.9 483 84.3
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 3.0e-239 831.6 480 82.5
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 3.0e-239 831.6 480 81.9
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 5.1e-239 830.9 478 82.2
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 6.7e-239 830.5 459 85.0
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 9.6e-238 826.6 472 83.5
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.3e-237 826.2 478 81.6
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.1e-237 825.5 482 82.0
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.8e-237 825.1 483 82.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.4e-236 822.0 472 83.1
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 5.3e-236 820.8 505 79.4
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 6.9e-236 820.5 480 81.7
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 9.0e-236 820.1 478 84.1
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 3.4e-235 818.1 479 81.2
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.7e-234 815.8 472 83.3
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 7.1e-233 810.4 456 83.8
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 2.7e-232 808.5 461 82.9
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.3e-230 801.2 503 78.7
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.3e-228 794.3 511 76.1
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 5.5e-225 784.3 507 76.5
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.1e-224 780.8 475 77.7
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 4.3e-222 774.6 475 78.9
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 7.9e-216 753.8 480 77.3
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 7.9e-216 753.8 480 76.9
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.0e-215 751.9 452 81.0
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 4.4e-214 748.0 481 76.9
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 4.2e-209 731.5 502 73.5
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.0e-207 726.9 386 87.3
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 3.3e-206 721.8 468 73.7
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 7.0e-204 714.1 474 72.6
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.2e-203 713.4 473 73.6
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.4e-198 695.3 456 71.9
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.6e-195 686.4 482 72.0
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 3.8e-186 655.2 459 71.2
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.3e-178 629.4 365 78.6
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.6e-176 623.2 367 77.9
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 5.8e-174 614.8 479 66.4
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 9.2e-172 607.4 454 67.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.4e-151 539.7 419 66.6
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 6.6e-146 521.5 304 80.3
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.3e-141 507.3 281 85.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 3.8e-141 505.8 304 78.9
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-140 504.2 275 86.2
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 4.3e-137 492.3 405 61.5
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.7e-133 480.3 436 54.4
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 5.4e-132 475.3 306 74.8
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 2.5e-124 449.9 304 72.4
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 8.4e-117 424.9 211 97.2
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.3e-105 386.0 254 72.8
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 8.5e-101 371.7 228 78.5
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 8.5e-101 371.7 228 78.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 7.9e-99 365.2 416 48.1
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 8.5e-93 345.1 463 44.7
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 4.7e-91 339.3 200 82.5
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.8e-79 300.8 427 42.9
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.7e-75 286.2 151 85.4
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.4e-71 274.6 179 70.4
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 9.2e-71 271.9 179 69.8
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 7.3e-68 262.3 171 73.7
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 9.5e-68 261.9 171 73.7
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-48 198.4 111 82.9
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 4.9e-48 196.4 110 81.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 4.9e-48 196.4 110 81.8
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.0e-37 162.2 95 85.3
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.1e-36 158.7 97 75.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.3e-36 157.1 105 69.5
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 5.4e-31 139.8 81 76.5
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 6.0e-30 136.3 79 81.0
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 2.8e-27 127.5 77 76.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.6e-22 111.7 133 44.4
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 2.3e-21 107.8 56 85.7
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 6.6e-21 106.3 66 71.2
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.1e-15 89.0 75 53.3
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 1.4e-15 88.6 73 65.8
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.4e-15 88.6 72 65.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.4e-15 88.6 72 65.3
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.6e-14 83.6 44 84.1
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 2.5e-12 77.8 46 78.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.1e-11 74.7 35 91.4
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 2.0e-09 68.2 61 55.7
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 1.0e-08 65.9 55 52.7
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 1.0e-08 65.9 55 52.7
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 2.9e-08 64.3 34 91.2
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 1.1e-07 62.4 48 56.2
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 1.4e-07 62.0 85 37.6
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 2.5e-07 61.2 81 39.5
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 9.3e-07 59.3 53 52.8
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 1.2e-06 58.9 55 49.1
arahy.Tifrunner.gnm1.ann1.E22CU6 Arachis hypogaea HOM05D001714 ORTHO05D084687 2.1e-06 58.2 39 71.8


User provided reference genes

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