Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 0.0e+00 3957.1 2079 100.0
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 0.0e+00 2500.3 2101 69.9
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1124.4 2081 42.7
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 0.0e+00 1107.0 2081 42.2
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 2.8e-311 1073.2 2040 42.1
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.8e-310 1069.7 2029 42.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 3.1e-309 1066.2 2115 42.6
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.0e-308 1063.5 2182 42.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.6e-308 1063.1 2083 41.7
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 6.1e-305 1052.0 2219 40.4
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 4.4e-303 1045.8 2041 42.0
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 5.5e-298 1028.9 2214 40.5
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.0e-284 983.8 2229 40.0
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.7e-284 983.4 2264 37.9
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.9e-282 977.2 2073 40.3
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 4.3e-282 976.1 2052 40.4
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.8e-280 970.7 1793 43.2
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 5.2e-272 942.6 2186 39.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 5.8e-271 939.1 2081 40.0
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.4e-261 907.1 2109 38.7
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 3.5e-252 876.7 2234 37.7
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 5.1e-251 872.8 2107 38.3
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 5.6e-242 842.8 2047 37.6
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.7e-230 804.7 2029 37.5
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.2e-229 800.4 2162 37.0
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-227 795.4 2012 37.7
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.1e-224 785.4 2100 36.9
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.0e-222 778.9 1900 36.9
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.6e-220 771.5 2165 35.0
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 7.9e-220 769.2 2074 36.4
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 5.9e-215 753.1 1196 48.0
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 2.5e-210 737.6 2056 36.3
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.1e-205 722.2 2188 35.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.0e-203 715.7 1912 36.7
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.8e-203 714.9 2007 35.7
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.6e-202 711.1 2183 35.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.3e-202 710.7 1286 43.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 5.7e-202 709.9 1888 36.7
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 6.3e-201 706.4 2198 35.3
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.0e-198 699.1 2189 35.2
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-198 698.7 799 59.3
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 6.3e-193 679.9 1904 36.2
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 6.5e-190 669.8 2115 35.5
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 3.4e-186 657.5 2147 34.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.3e-185 655.6 788 56.9
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.7e-185 655.2 1960 35.6
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 3.5e-183 647.5 1949 34.6
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-180 639.0 2151 34.0
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.6e-180 637.5 800 56.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.6e-178 631.3 1968 34.5
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 6.3e-177 626.7 1092 44.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 2.4e-168 598.2 1961 33.9
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.5e-165 588.2 731 54.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.1e-164 585.1 2109 31.7
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 4.4e-162 577.4 1660 36.5
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.9e-161 574.7 2056 32.9
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 1.3e-153 549.3 2218 31.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.9e-152 545.4 977 44.5
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.5e-151 541.2 2124 30.5
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.3e-150 538.5 2049 31.9
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 3.9e-150 537.7 1961 32.4
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.5e-149 535.8 2170 30.0
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.9e-149 535.4 2107 30.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 5.6e-149 533.9 864 48.1
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 4.7e-148 530.8 912 45.3
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-147 529.6 479 68.7
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 8.9e-147 526.6 999 43.9
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.2e-146 526.2 2138 30.4
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 3.4e-146 524.6 1959 31.1
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 5.8e-146 523.9 962 44.5
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.9e-144 518.8 2045 31.2
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.0e-142 511.5 1932 31.1
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.6e-140 505.8 2040 30.3
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 8.1e-140 503.4 1998 32.6
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.4e-138 498.0 1907 29.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.7e-137 495.7 894 45.5
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 3.5e-135 488.0 870 42.3
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 8.7e-134 483.4 774 45.3
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.3e-133 481.5 774 45.1
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 2.4e-131 475.3 2159 30.7
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 4.0e-131 474.6 786 45.7
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 9.0e-131 473.4 885 45.6
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 9.9e-130 469.9 781 45.7
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 6.4e-129 467.2 871 44.8
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 8.4e-129 466.8 2265 29.8
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 9.3e-128 463.4 1892 30.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.2e-127 463.0 1991 30.7
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.1e-125 456.4 1883 29.7
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.3e-124 453.0 2105 29.6
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.4e-120 438.7 2237 29.6
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 9.3e-120 436.8 828 43.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.1e-117 429.9 855 42.8
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.0e-114 419.1 825 43.4
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 3.2e-112 411.8 2027 29.8
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.2e-112 411.4 562 53.2
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.0e-110 406.8 784 43.2
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.1e-110 404.4 895 41.7
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.1e-110 404.4 738 42.7
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 2.8e-108 398.7 1190 35.1
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 5.3e-107 394.4 887 40.9
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-106 393.3 734 45.1
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.9e-105 388.7 935 39.4
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.0e-102 380.2 492 49.8
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 3.3e-101 375.2 1058 34.8
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.2e-100 372.5 799 41.1
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.4e-94 353.2 648 41.0
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.1e-85 323.6 906 35.5
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.9e-82 311.2 577 44.9
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 4.8e-76 291.6 334 59.3
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 1.6e-71 276.6 713 34.5
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 3.0e-70 272.3 657 39.9
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.8e-68 265.8 257 57.2
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 6.8e-62 244.6 280 62.5
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 3.7e-52 212.2 1071 28.5
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 6.4e-52 211.5 775 31.7
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.2e-51 209.1 561 38.3
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.6e-47 196.8 1670 25.4
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.3e-44 187.2 531 33.1
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.1e-43 184.1 1548 24.7
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 4.1e-43 182.2 1185 26.3
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 2.7e-42 179.5 904 26.8
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.6e-42 178.7 1731 26.2
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.0e-41 175.3 219 46.6
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 3.7e-36 159.1 149 56.4
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 7.1e-35 154.8 216 44.4
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.3e-33 149.8 208 61.1
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.9e-32 146.7 137 56.2
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 2.5e-32 146.4 105 69.5
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.8e-30 140.2 745 30.9
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 8.1e-23 114.8 144 48.6
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-20 107.1 386 31.6
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 8.4e-20 104.8 240 35.8
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 7.8e-18 98.2 96 61.5
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.5e-13 82.4 100 52.0
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 7.6e-13 81.6 134 41.0
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 3.9e-09 69.3 143 32.9
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 6.2e-07 62.0 134 41.8
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 8.1e-07 61.6 144 31.2


User provided reference genes

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