Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-275 952.6 521 100.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.9e-231 805.8 524 86.8
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 7.1e-210 734.2 519 72.3
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.5e-207 726.5 519 72.1
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 3.3e-207 725.3 515 72.6
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 7.3e-207 724.2 526 71.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.6e-206 721.8 521 71.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 4.4e-204 714.9 535 70.3
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.8e-204 714.5 510 70.6
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 9.9e-204 713.8 535 70.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 9.9e-204 713.8 508 71.7
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 9.9e-204 713.8 526 70.2
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.2e-203 712.6 510 71.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-203 712.6 510 71.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.2e-203 712.6 522 70.5
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 3.8e-203 711.8 515 70.7
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.9e-203 711.4 521 71.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.4e-203 711.1 528 70.5
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 8.4e-203 710.7 517 71.4
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-202 710.3 510 70.6
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-202 710.3 510 70.8
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.4e-202 709.1 516 69.2
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 5.4e-202 708.0 516 70.7
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.6e-201 706.4 535 69.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.3e-200 703.4 524 70.2
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 2.3e-200 702.6 501 71.3
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 3.9e-200 701.8 516 70.3
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.5e-199 699.9 511 70.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.9e-199 699.5 501 70.9
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 4.3e-199 698.4 520 69.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 7.3e-199 697.6 518 69.1
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 9.0e-197 690.6 544 67.3
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 5.8e-196 688.0 517 68.3
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 5.8e-196 688.0 516 68.4
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.9e-196 687.2 507 70.0
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-195 686.8 553 66.0
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-195 686.8 525 67.0
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.7e-195 686.4 520 68.1
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.1e-194 683.7 517 67.9
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.9e-194 682.9 518 68.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 7.1e-194 681.0 549 65.2
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.2e-193 680.2 527 68.1
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.6e-193 679.9 516 67.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.1e-193 679.5 524 67.2
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 4.6e-193 678.3 518 68.7
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.7e-192 676.4 510 68.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.0e-192 675.6 516 67.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-191 673.3 516 68.4
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.5e-191 673.3 518 68.3
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 3.3e-191 672.2 523 66.2
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 5.6e-191 671.4 546 65.2
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 7.3e-191 671.0 532 66.9
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.8e-190 669.1 519 66.7
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.8e-189 666.4 516 66.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 4.0e-189 665.2 519 66.5
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 5.3e-189 664.8 514 66.3
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.2e-187 659.4 516 66.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 3.8e-187 658.7 532 64.8
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.9e-186 656.4 516 65.9
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.1e-186 654.4 510 66.1
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.3e-186 654.1 517 66.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.6e-185 653.3 505 66.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.7e-185 652.5 518 66.6
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.7e-185 652.5 506 65.6
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.1e-184 648.3 513 65.5
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 8.7e-184 647.5 533 65.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 8.7e-184 647.5 514 64.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.1e-183 647.1 525 64.6
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 4.3e-183 645.2 476 71.8
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 5.6e-183 644.8 526 64.4
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.4e-183 644.4 516 65.1
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 8.1e-182 641.0 432 75.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.1e-181 640.6 522 63.8
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 9.0e-181 637.5 506 66.4
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 9.0e-181 637.5 506 66.4
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 9.0e-181 637.5 524 63.5
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.8e-180 634.8 557 61.4
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.2e-179 632.9 538 63.6
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.2e-179 632.9 506 66.4
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 4.2e-178 628.6 587 58.8
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 5.5e-178 628.2 527 63.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 9.3e-178 627.5 509 62.1
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.2e-177 627.1 464 70.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 5.1e-176 621.7 510 64.1
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 5.1e-176 621.7 519 63.4
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.7e-176 621.3 489 64.8
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.5e-175 619.4 525 61.9
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.3e-171 607.1 518 64.5
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.9e-171 605.1 519 61.8
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.2e-169 600.5 526 63.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 8.7e-168 594.3 523 61.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.4e-165 587.0 480 65.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.4e-165 586.3 480 65.0
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.0e-164 583.2 518 59.7
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-160 570.5 417 69.8
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.3e-157 558.5 505 57.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 8.5e-155 551.2 543 55.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 3.6e-153 545.8 453 62.9
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.3e-152 543.1 522 57.3
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.0e-144 516.2 487 56.5
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 8.8e-144 514.6 495 56.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.4e-143 511.5 490 56.1
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.8e-142 509.6 470 60.0
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 5.3e-141 505.4 386 68.1
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.6e-137 492.7 452 58.6
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 8.0e-137 491.5 515 51.3
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.1e-133 481.1 371 68.7
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 7.0e-133 478.4 514 50.0
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.9e-131 473.0 371 67.7
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 8.5e-131 471.5 369 66.9
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.7e-129 465.7 486 53.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 4.0e-128 462.6 340 68.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 4.0e-128 462.6 493 50.7
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 5.2e-128 462.2 519 52.2
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.0e-124 450.3 269 80.3
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 2.7e-124 449.9 361 66.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 7.2e-122 441.8 407 59.5
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.3e-118 428.7 515 48.3
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 5.4e-117 425.6 498 47.6
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.0e-112 411.4 515 47.6
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.2e-102 377.1 415 53.0
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.9e-101 374.0 357 59.4
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.2e-100 371.3 330 62.1
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.7e-99 367.5 323 64.1
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.0e-96 356.3 477 48.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 4.9e-94 349.4 418 44.5
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.6e-81 306.6 241 66.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.4e-77 293.9 365 50.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.6e-75 285.8 293 56.3
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.8e-73 280.4 222 62.2
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-72 277.3 163 81.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.1e-72 276.9 235 60.0
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.2e-65 252.7 310 49.7
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.4e-62 242.3 146 80.1
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.8e-57 227.3 406 37.2
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.1e-56 225.3 151 74.8
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.6e-55 220.7 151 74.8
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 5.1e-51 206.5 337 46.0
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.1e-50 205.3 314 36.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.5e-42 178.3 166 57.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.6e-36 157.1 158 60.1
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.4e-35 155.2 114 64.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.7e-34 149.8 125 60.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.7e-34 149.1 192 49.5
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.6e-26 124.4 379 34.0
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 9.1e-24 115.9 77 70.1
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.0e-23 114.8 114 58.8
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.0e-16 89.7 58 63.8
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.0e-11 75.9 38 89.5
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.0e-11 73.9 64 53.1
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.5e-10 72.0 41 80.5
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-09 68.9 57 61.4
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.3e-09 68.9 46 73.9
SHI13287 Sapria himalayana HOM05D005377 ORTHO05D003034 1.0e-06 59.3 51 45.1
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.8e-06 57.4 58 44.8


User provided reference genes

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