Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 2.1e-252 875.5 565 100.0
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.9e-200 703.0 588 80.8
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.7e-148 530.4 591 62.9
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.2e-148 530.0 577 61.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 4.9e-148 528.9 577 63.4
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 6.4e-148 528.5 599 60.6
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 6.0e-146 521.9 582 61.2
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.3e-145 520.8 593 62.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 6.6e-145 518.5 563 59.9
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.5e-144 517.3 580 62.2
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 5.6e-144 515.4 587 62.9
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.3e-144 515.0 586 61.9
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.1e-143 513.5 587 58.3
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 2.1e-143 513.5 568 63.4
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 4.7e-143 512.3 568 59.0
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 3.1e-142 509.6 565 54.3
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 3.4e-141 506.1 582 59.1
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.3e-140 504.2 578 63.7
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.8e-140 502.7 581 63.3
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 6.0e-138 495.4 614 60.6
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.0e-137 494.6 565 63.9
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.3e-137 493.4 582 59.6
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 6.6e-137 491.9 585 62.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.3e-136 489.6 583 57.3
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.2e-135 487.6 564 57.4
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.1e-135 486.9 571 63.4
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 8.1e-135 485.0 581 57.0
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.1e-134 484.6 550 57.6
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.4e-134 484.2 599 61.3
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 5.2e-134 482.3 571 59.7
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 3.4e-133 479.6 591 57.2
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 4.4e-133 479.2 585 54.7
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 4.9e-132 475.7 558 60.6
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 8.4e-132 474.9 584 57.4
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.9e-131 473.8 585 61.5
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.2e-131 473.0 586 57.0
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 4.2e-131 472.6 567 55.9
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 5.4e-131 472.2 575 58.3
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 7.1e-131 471.9 591 55.8
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.1e-131 471.9 580 57.6
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.6e-130 470.7 581 61.4
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.1e-130 470.3 557 51.9
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 4.6e-130 469.2 564 58.9
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 4.6e-130 469.2 578 59.7
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 6.0e-130 468.8 561 58.8
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 7.8e-130 468.4 582 56.2
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 5.1e-129 465.7 585 53.0
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 6.6e-129 465.3 557 57.5
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 6.6e-129 465.3 635 53.2
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.1e-128 464.5 577 61.7
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 2.5e-128 463.4 570 56.5
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 3.3e-128 463.0 574 56.3
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 3.3e-128 463.0 571 58.8
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-127 461.1 572 56.8
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 6.2e-127 458.8 576 54.2
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.4e-126 457.6 561 60.4
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.8e-126 457.2 580 59.1
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 5.3e-126 455.7 566 60.6
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 9.0e-126 454.9 573 55.5
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.0e-125 453.8 573 55.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 2.0e-125 453.8 572 55.9
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 2.0e-125 453.8 577 54.4
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 3.4e-125 453.0 556 51.8
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 9.9e-125 451.4 605 53.6
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.3e-124 451.1 563 59.9
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.7e-124 450.7 579 56.8
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 2.9e-124 449.9 572 53.8
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 3.8e-124 449.5 565 54.7
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 5.4e-123 445.7 591 54.8
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 7.1e-123 445.3 585 58.5
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.2e-122 444.5 558 55.2
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.6e-122 444.1 570 55.3
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.1e-122 443.7 558 58.4
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 3.5e-122 443.0 576 55.9
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 3.5e-122 443.0 576 54.2
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 6.0e-122 442.2 557 59.2
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 6.0e-122 442.2 600 53.7
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 7.9e-122 441.8 549 50.5
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.8e-121 440.7 574 61.0
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 5.1e-121 439.1 606 54.1
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-120 438.0 558 55.9
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.6e-120 435.6 565 56.8
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 7.4e-120 435.3 586 52.6
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 9.6e-120 434.9 643 57.2
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.6e-119 434.1 569 54.7
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 3.7e-119 433.0 574 51.9
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.1e-118 431.4 590 54.1
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-118 431.4 559 56.2
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 6.9e-118 428.7 573 49.0
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 1.2e-117 427.9 578 56.9
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.6e-117 426.8 561 56.3
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 2.9e-116 423.3 604 56.6
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 4.9e-116 422.5 568 54.4
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 6.4e-116 422.2 568 50.7
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 3.5e-114 416.4 584 50.3
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 5.1e-113 412.5 591 53.8
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.5e-112 410.2 589 48.7
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 4.3e-112 409.5 559 47.6
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 6.0e-106 389.0 583 54.7
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.0e-105 388.3 554 44.8
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.9e-105 386.3 564 53.9
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.9e-104 384.0 569 50.3
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.3e-104 382.9 564 52.3
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.3e-103 381.3 496 54.4
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.7e-103 379.8 532 46.1
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 1.1e-102 378.3 561 46.2
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 2.8e-95 353.6 533 49.5
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 2.0e-88 330.9 605 49.1
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.8e-87 327.0 332 58.7
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 7.7e-85 318.9 388 59.0
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.2e-79 300.8 537 46.4
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.0e-77 294.3 542 38.7
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 3.6e-74 283.5 549 45.7
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.8e-73 281.2 509 46.0
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.3e-73 280.8 389 53.0
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.3e-73 280.8 564 46.3
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.2e-72 278.5 494 41.3
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 7.2e-67 259.2 587 35.8
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 8.9e-57 225.7 173 70.5
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.7e-55 221.5 180 65.6
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.7e-52 211.5 366 49.5
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 3.8e-52 210.3 143 75.5
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.1e-51 208.8 246 51.2
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.1e-50 204.5 126 84.1
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.5e-48 198.4 247 48.2
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.6e-45 188.3 237 45.6
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 8.6e-44 182.6 389 45.0
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.4e-41 175.3 239 48.1
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 4.1e-38 163.7 187 49.7
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 4.1e-38 163.7 187 49.7
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 2.0e-32 144.8 234 39.3
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 4.6e-29 133.7 117 57.3
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 6.6e-28 129.8 115 62.6
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 9.9e-24 115.9 150 51.3
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.8e-21 106.3 178 41.6
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.6e-18 98.6 96 56.2
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.8e-18 97.8 61 78.7
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 4.7e-18 97.1 250 32.0
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.9e-14 85.1 68 70.6
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 3.2e-14 84.3 58 74.1
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 4.2e-14 84.0 88 55.7
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 6.6e-12 76.6 77 53.2
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 8.7e-12 76.3 62 69.4
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 8.7e-12 76.3 79 51.9
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.4e-09 68.9 69 55.1
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 9.0e-09 66.2 101 42.6
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.8e-08 63.5 36 80.6
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.4e-06 58.9 67 52.2
BcaC06g34714 Brassica carinata HOM05D000589 ORTHO05D001885 4.2e-06 57.4 47 61.7


User provided reference genes

Program Settings