Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.6e-289 998.0 522 100.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.5e-244 849.4 493 85.2
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.2e-241 839.7 484 85.3
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.6e-241 839.3 484 85.1
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.0e-241 839.0 475 86.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.5e-241 838.2 462 88.7
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.9e-241 837.4 484 84.9
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.0e-237 826.6 468 86.3
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 5.8e-236 820.8 491 82.5
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.8e-236 820.8 473 85.2
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.9e-235 818.5 482 82.8
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.3e-235 817.0 482 83.0
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.1e-234 816.6 472 84.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.4e-234 816.2 470 85.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.4e-234 816.2 475 82.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 5.4e-234 814.3 470 85.3
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 5.4e-234 814.3 470 84.9
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 9.2e-234 813.5 470 83.8
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.2e-233 813.1 487 83.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.6e-233 812.8 472 83.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.6e-233 811.2 461 85.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.6e-233 811.2 462 85.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 6.0e-233 810.8 459 86.3
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.0e-232 810.1 462 84.6
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.0e-232 810.1 494 80.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.3e-232 809.7 462 85.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.3e-232 809.7 461 84.6
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.9e-232 808.1 489 81.8
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 8.6e-232 807.0 475 82.3
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 8.6e-232 807.0 467 85.2
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.5e-231 805.4 492 80.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 5.6e-231 804.3 471 83.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 5.6e-231 804.3 465 84.3
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 7.3e-231 803.9 461 84.2
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.6e-230 802.7 469 84.2
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.1e-230 802.4 467 82.4
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.6e-230 801.6 466 83.3
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 3.6e-230 801.6 490 80.6
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.7e-230 801.2 460 85.7
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.7e-230 801.2 484 81.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 6.2e-230 800.8 468 82.1
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 6.2e-230 800.8 469 82.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 6.2e-230 800.8 481 81.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.1e-229 800.0 482 81.3
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.8e-229 799.3 461 83.5
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.1e-229 798.5 485 80.2
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 4.0e-229 798.1 461 84.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.0e-229 798.1 496 80.0
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.2e-229 797.7 474 82.1
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 6.8e-229 797.3 461 83.5
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 8.9e-229 797.0 466 83.7
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 8.9e-229 797.0 476 81.5
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.6e-228 795.4 462 83.1
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.6e-228 795.4 487 80.3
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 4.4e-228 794.7 486 78.8
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.5e-228 793.9 496 79.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 9.8e-228 793.5 461 83.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.3e-227 793.1 466 82.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.9e-227 792.0 467 82.2
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 3.7e-227 791.6 485 80.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.4e-226 789.6 492 79.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.4e-226 789.6 467 82.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.2e-226 788.5 480 81.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.4e-226 787.7 470 83.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.6e-225 786.2 461 82.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.6e-225 786.2 463 82.9
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.6e-225 784.6 459 82.8
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.8e-225 783.9 468 81.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.0e-224 783.5 461 82.6
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.0e-224 781.9 476 80.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.0e-224 781.9 538 74.0
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.9e-224 781.6 460 82.6
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.1e-223 780.0 486 77.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.5e-223 779.6 494 77.5
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 476 79.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-223 778.9 492 77.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.3e-223 778.5 470 80.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.3e-223 778.5 472 79.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 5.6e-223 777.7 479 78.9
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 5.6e-223 777.7 492 77.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 7.3e-223 777.3 474 79.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.3e-223 777.3 466 80.3
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 9.5e-223 776.9 474 79.3
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 6.2e-222 774.2 459 82.6
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.1e-221 773.5 473 78.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.8e-221 772.7 496 77.2
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.3e-221 772.3 490 76.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 3.1e-221 771.9 470 80.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.8e-221 770.8 483 78.9
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.5e-220 769.6 490 76.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.5e-220 767.3 492 77.2
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 9.9e-220 766.9 490 76.5
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.7e-219 766.1 464 79.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.2e-219 765.8 463 80.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.7e-219 765.0 532 74.1
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.3e-215 751.5 489 75.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 7.3e-215 750.7 475 79.6
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.4e-213 745.7 483 75.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 4.0e-213 745.0 484 76.4
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 8.9e-213 743.8 473 78.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 7.6e-212 740.7 460 79.1
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.3e-211 740.0 472 76.3
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.1e-208 728.0 470 74.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.1e-205 720.3 469 75.7
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.1e-205 720.3 467 73.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.3e-203 713.4 415 82.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.8e-203 711.8 476 72.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.1e-201 706.1 457 73.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 8.7e-200 700.7 419 81.6
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.3e-198 696.8 459 74.9
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.5e-196 689.9 459 72.5
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.0e-196 689.5 471 75.2
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 9.9e-196 687.2 405 85.2
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.6e-193 679.9 465 72.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.6e-193 678.3 385 87.0
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.3e-192 676.8 385 87.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.1e-192 674.9 429 76.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.8e-188 661.4 373 85.3
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.1e-186 657.1 373 84.2
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-185 653.7 479 71.6
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-184 649.8 484 67.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.0e-184 649.0 453 68.9
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.6e-182 643.3 386 83.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 7.6e-180 634.4 715 50.9
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 7.1e-178 627.9 458 69.4
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.0e-176 624.0 472 69.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-172 610.5 484 64.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.2e-164 583.9 336 86.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.5e-155 551.6 394 72.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-121 440.7 337 68.5
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.0e-115 421.4 259 80.3
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 7.3e-114 415.2 238 84.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.7e-102 376.3 292 64.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-97 361.3 253 73.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.8e-94 349.7 457 41.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.6e-89 333.2 461 39.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.1e-88 331.6 476 38.0
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.8e-88 330.9 200 80.0
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 5.8e-79 299.3 225 67.6
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-65 254.6 400 41.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.1e-61 241.9 131 89.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-56 225.3 157 73.2
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 3.1e-56 223.8 170 65.3
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 7.7e-55 219.2 165 70.3
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 9.4e-53 212.2 196 57.1
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-46 191.0 253 45.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.7e-44 184.1 98 89.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 8.8e-43 179.1 131 63.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.7e-42 176.4 378 30.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.7e-41 174.9 123 61.8
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 3.1e-40 170.6 91 91.2
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.2e-38 164.5 122 66.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-31 142.1 124 53.2
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.2e-31 142.1 80 83.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-30 137.5 93 76.3
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.1e-28 131.3 290 30.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.7e-28 131.0 74 86.5
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.0e-26 124.8 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 7.5e-26 122.9 100 62.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-14 85.1 56 66.1
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 6.6e-14 83.2 95 52.6
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.1e-12 76.6 67 56.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.0e-11 75.9 41 80.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 47 72.3
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 9.2e-08 62.8 223 27.8
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.0e-07 61.6 35 80.0
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 7.8e-07 59.7 223 26.9
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.3e-06 58.9 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.0e-06 57.0 34 76.5


User provided reference genes

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