Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 0.0e+00 1249.6 651 100.0
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.7e-290 1002.3 651 81.9
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 7.8e-182 641.3 653 55.0
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 7.3e-180 634.8 654 56.1
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 2.0e-177 626.7 653 54.7
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 9.2e-175 617.8 653 54.8
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 1.4e-170 604.0 655 52.8
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 7.8e-166 588.2 655 52.5
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.9e-164 583.6 655 52.4
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 4.3e-164 582.4 655 52.2
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 1.2e-163 580.9 677 51.4
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 8.7e-157 558.1 705 47.2
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 9.6e-156 554.7 705 47.1
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 3.1e-154 549.7 706 47.3
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 7.6e-153 545.0 705 46.7
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.4e-151 540.8 657 50.7
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 1.6e-150 537.3 710 48.5
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 8.7e-149 531.6 670 49.1
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 9.6e-148 528.1 707 46.0
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 1.3e-147 527.7 703 45.7
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 1.6e-147 527.3 706 45.5
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 6.2e-147 525.4 645 49.0
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 2.1e-142 510.4 654 47.9
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 1.1e-140 504.6 649 47.1
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 3.1e-138 496.5 698 45.1
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 4.0e-138 496.1 649 46.2
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 5.3e-138 495.7 635 46.6
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 6.5e-136 488.8 670 46.3
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 5.5e-135 485.7 707 45.7
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 4.6e-134 482.6 652 47.5
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 3.0e-133 479.9 610 49.5
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 3.0e-133 479.9 644 46.3
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 8.7e-133 478.4 667 45.4
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 2.5e-132 476.9 655 44.9
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 3.3e-132 476.5 709 44.3
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 5.3e-130 469.2 654 46.5
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 9.3e-127 458.4 714 43.4
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 1.2e-126 458.0 666 44.6
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 1.2e-126 458.0 652 44.5
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 2.1e-126 457.2 575 49.0
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.4e-125 454.5 659 45.2
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 6.7e-125 452.2 705 42.1
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 1.1e-124 451.4 654 44.8
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 8.2e-123 445.3 638 43.1
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 1.8e-122 444.1 715 41.7
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 1.3e-120 438.0 655 42.1
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 6.5e-120 435.6 695 40.4
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.5e-119 433.7 624 45.0
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 4.4e-116 422.9 644 41.9
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 9.7e-116 421.8 700 40.4
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 3.7e-115 419.9 659 43.2
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 5.3e-114 416.0 659 41.3
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 1.7e-112 411.0 648 41.2
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 2.9e-112 410.2 654 41.4
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.9e-112 410.2 657 42.5
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 3.8e-112 409.8 643 43.1
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 8.5e-112 408.7 516 46.3
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 1.5e-108 397.9 639 42.4
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 2.8e-107 393.7 647 41.1
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 2.4e-106 390.6 646 42.4
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 9.1e-106 388.7 677 38.7
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 9.1e-106 388.7 705 38.9
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 5.5e-103 379.4 471 49.0
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 1.2e-102 378.3 649 40.7
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 2.7e-102 377.1 659 39.3
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 8.2e-99 365.5 581 42.2
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 1.6e-97 361.3 687 37.7
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.1e-95 355.1 599 39.7
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 4.2e-95 353.2 648 38.6
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 9.4e-95 352.1 555 41.1
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 1.4e-93 348.2 643 39.3
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 6.8e-93 345.9 651 37.9
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 1.5e-92 344.7 646 38.1
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.8e-91 339.7 691 38.1
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 4.8e-91 339.7 671 37.0
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 8.3e-91 339.0 711 35.2
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.7e-89 334.0 482 45.6
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 2.9e-88 330.5 540 40.4
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 3.8e-88 330.1 672 37.4
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 1.1e-87 328.6 308 56.8
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 3.3e-87 327.0 659 35.7
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 4.9e-83 313.2 654 37.5
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 4.9e-83 313.2 654 37.5
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 4.9e-83 313.2 648 37.2
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 1.1e-82 312.0 648 37.0
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 4.1e-82 310.1 714 33.5
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.6e-81 308.1 422 45.0
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 3.5e-81 307.0 642 37.2
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 9.5e-79 298.9 369 50.7
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 3.7e-75 287.0 671 34.6
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 9.2e-74 282.3 658 35.7
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 5.0e-72 276.6 265 56.2
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 6.6e-72 276.2 687 33.6
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 8.6e-72 275.8 429 43.1
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 1.9e-71 274.6 655 35.4
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 4.7e-70 270.0 673 33.9
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 1.4e-69 268.5 321 46.4
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 3.1e-69 267.3 327 45.0
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 4.4e-68 263.5 678 33.0
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 6.4e-67 259.6 666 32.6
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 1.2e-65 255.4 669 32.6
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 4.6e-65 253.4 651 34.3
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 6.0e-65 253.1 684 35.4
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 6.2e-62 243.0 305 49.8
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 9.9e-60 235.7 208 58.7
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.7e-59 235.0 209 58.4
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 2.5e-55 221.1 428 37.4
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 8.9e-53 212.6 307 44.6
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 1.7e-51 208.4 514 35.0
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.2e-49 202.2 299 44.1
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.8e-45 188.3 200 51.5
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 3.4e-44 184.1 127 70.1
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 2.2e-43 181.4 373 36.5
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 7.3e-39 166.4 134 61.9
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 7.1e-34 149.8 246 43.5
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 1.5e-31 142.1 723 26.7
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 6.2e-30 136.7 214 41.1
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 3.8e-27 127.5 305 34.4
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 3.9e-24 117.5 176 45.5
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 5.1e-24 117.1 336 29.2
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 2.5e-23 114.8 82 64.6
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 5.6e-23 113.6 209 38.8
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 1.2e-20 105.9 98 51.0
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 2.6e-20 104.8 440 28.4
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 6.7e-16 90.1 175 39.4
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 1.2e-09 69.3 196 28.6
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 6.1e-09 67.0 78 41.0
CBR_g41780 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-06 57.4 48 60.4


User provided reference genes

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