Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 8.1e-191 670.6 438 100.0
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 2.3e-177 625.9 443 91.9
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 9.9e-165 583.9 441 74.4
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-152 543.9 453 80.6
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 8.2e-151 537.7 444 85.4
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 1.4e-150 537.0 445 80.7
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 2.4e-150 536.2 439 84.3
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 2.9e-148 529.3 474 80.0
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 3.8e-148 528.9 446 77.4
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.0e-145 520.8 441 79.1
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.8e-145 520.0 487 72.3
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 3.0e-145 519.2 445 80.0
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.9e-144 516.5 437 68.2
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 9.0e-142 507.7 447 77.6
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 5.9e-141 505.0 438 75.3
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 5.0e-140 501.9 440 70.2
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-139 500.7 438 82.6
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 9.4e-139 497.7 458 74.7
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 9.4e-139 497.7 441 72.1
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.4e-137 493.8 440 75.5
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 2.3e-137 493.0 441 77.1
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.0e-137 492.7 442 73.8
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 6.7e-137 491.5 438 78.5
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 6.7e-137 491.5 439 70.4
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.3e-136 488.8 438 78.1
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 5.7e-136 488.4 434 74.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.2e-135 486.5 438 77.4
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.4e-134 483.8 438 78.1
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.8e-134 483.4 451 70.1
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 4.1e-134 482.3 445 72.4
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 5.3e-134 481.9 440 69.8
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 1.5e-133 480.3 443 73.6
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 2.0e-133 479.9 435 70.1
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.6e-133 479.6 439 65.1
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 5.9e-133 478.4 454 72.5
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 7.7e-133 478.0 445 72.4
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 5.0e-132 475.3 444 66.2
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 6.5e-132 474.9 443 72.0
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 3.2e-131 472.6 438 72.1
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 5.5e-131 471.9 442 75.3
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 6.1e-130 468.4 437 61.3
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.8e-129 466.8 525 64.6
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 3.9e-129 465.7 421 75.5
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.9e-129 465.7 437 67.7
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.1e-128 464.2 410 77.8
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.7e-127 460.3 444 75.2
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-126 457.2 421 67.5
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 1.4e-126 457.2 488 57.2
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 5.3e-126 455.3 437 70.0
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.5e-125 453.8 251 87.3
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.0e-125 453.4 434 71.4
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 2.6e-125 453.0 443 72.5
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 3.5e-125 452.6 436 67.0
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 3.5e-125 452.6 437 65.9
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 3.5e-125 452.6 449 69.0
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.7e-125 451.4 424 71.2
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.7e-125 451.4 432 70.6
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 7.7e-125 451.4 432 70.8
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.3e-124 450.7 467 64.2
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.3e-124 450.7 436 73.2
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.7e-124 450.3 441 73.2
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.2e-124 449.9 425 71.1
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.9e-124 449.5 428 72.0
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 2.9e-124 449.5 439 64.9
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.5e-123 447.2 494 66.0
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 5.5e-123 445.3 437 71.9
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 9.4e-123 444.5 432 72.5
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 2.1e-122 443.4 421 62.7
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 3.6e-122 442.6 435 67.8
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.4e-121 440.7 437 71.2
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.4e-121 440.7 437 70.5
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 6.7e-121 438.3 438 69.4
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 8.8e-121 438.0 436 69.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.3e-120 436.0 447 70.7
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.7e-120 435.3 421 56.8
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 2.2e-119 433.3 437 67.3
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.8e-119 432.2 229 88.6
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 3.1e-118 429.5 509 59.9
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 1.2e-117 427.6 430 55.8
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 7.7e-117 424.9 231 85.7
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.7e-116 423.7 244 83.2
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 3.8e-116 422.5 264 79.9
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 8.5e-116 421.4 436 66.7
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.5e-115 419.9 435 57.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.2e-114 417.5 233 85.4
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 2.1e-114 416.8 225 88.0
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 3.6e-114 416.0 436 67.2
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 4.7e-114 415.6 438 66.7
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.4e-113 414.1 443 54.9
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 5.2e-113 412.1 513 57.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 6.8e-113 411.8 438 61.0
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.0e-112 410.2 436 60.6
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 4.8e-111 405.6 440 62.7
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.8e-111 405.6 244 81.1
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.4e-110 404.1 249 77.1
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.6e-109 400.6 509 56.4
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 8.5e-108 394.8 228 81.1
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 8.5e-108 394.8 233 79.8
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.9e-107 393.7 436 59.2
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 7.2e-107 391.7 240 74.6
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 7.2e-107 391.7 240 74.6
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 6.1e-106 388.7 386 74.9
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 5.2e-105 385.6 228 78.5
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.7e-101 373.2 231 77.1
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 5.5e-99 365.5 389 66.3
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.1e-91 341.3 392 62.2
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.8e-85 318.5 155 91.6
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.0e-81 306.2 216 69.0
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.3e-79 301.2 149 90.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.2e-77 294.7 341 65.4
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 6.8e-73 278.9 296 84.8
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.8e-72 275.8 137 89.1
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.3e-71 274.6 347 70.0
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.3e-67 260.0 346 67.6
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 4.7e-66 256.1 358 62.6
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.4e-65 254.6 242 56.2
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 3.1e-65 253.4 152 80.3
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 5.2e-65 252.7 144 83.3
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.2e-64 251.5 328 69.5
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 8.4e-63 245.4 175 72.6
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.4e-62 244.6 296 74.7
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.8e-61 238.8 325 56.0
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 4.3e-59 233.0 321 68.8
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 7.3e-59 232.3 219 52.1
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 2.1e-58 230.7 204 53.9
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 8.4e-55 218.8 336 53.0
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 7.1e-54 215.7 112 88.4
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.2e-48 198.4 102 89.2
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.7e-47 194.5 195 56.4
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.1e-46 189.1 97 91.8
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.7e-45 187.2 96 86.5
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 6.7e-44 182.6 96 88.5
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.7e-42 176.8 129 64.3
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 6.2e-42 176.0 97 85.6
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.5e-40 171.4 305 54.1
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 9.3e-38 162.2 84 86.9
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.5e-37 160.2 86 88.4
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.0e-36 158.7 83 85.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 3.3e-35 153.7 80 91.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.4e-33 148.3 80 88.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 1.2e-32 145.2 80 85.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.9e-27 127.9 260 60.8
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 9.7e-27 125.6 77 79.2
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.7e-27 125.6 84 75.0
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.1e-25 122.1 290 57.2
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.1e-25 120.6 255 55.7
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.3e-23 115.2 267 43.1
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 4.2e-22 110.2 74 71.6
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 7.9e-21 105.9 327 44.3
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.0e-20 105.5 60 85.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.3e-20 104.4 68 72.1
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.0e-15 89.0 61 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 8.5e-15 85.9 68 64.7
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 5.1e-12 76.6 43 83.7
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.4e-09 67.8 58 56.9


User provided reference genes

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