Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9785 Trifolium pratense HOM05D002270 ORTHO05D002866 1.6e-42 175.6 87 100.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 6.0e-37 157.1 82 92.7
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.7e-36 155.6 82 91.5
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.9e-36 154.5 82 91.5
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 1.4e-33 146.0 81 86.4
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 4.0e-33 144.4 81 85.2
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 9.8e-32 139.8 81 84.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.7e-31 139.0 80 82.5
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 4.9e-31 137.5 81 77.8
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 4.9e-31 137.5 80 81.2
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 8.3e-31 136.7 81 80.2
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 3.2e-30 134.8 80 80.0
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 5.4e-30 134.0 81 77.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 5.4e-30 134.0 81 80.2
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 7.0e-30 133.7 81 75.3
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.6e-29 132.5 81 79.0
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 1.6e-29 132.5 76 82.9
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 7.8e-29 130.2 81 74.1
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.0e-28 129.8 82 76.8
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.3e-28 128.6 80 75.0
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.0e-28 128.3 79 75.9
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 3.9e-28 127.9 81 75.3
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 3.9e-28 127.9 81 71.6
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 6.6e-28 127.1 79 74.7
TAR636G2258 Trochodendron aralioides HOM05D002270 ORTHO05D002866 8.6e-28 126.7 79 75.9
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 1.1e-27 126.3 81 74.1
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.1e-27 126.3 81 74.1
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.5e-27 125.9 82 73.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.5e-27 125.9 79 75.9
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 5.6e-27 124.0 79 73.4
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 9.5e-27 123.2 85 74.1
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 9.5e-27 123.2 82 69.5
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.2e-26 122.9 79 73.4
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.2e-26 122.9 79 73.4
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.2e-26 122.9 79 73.4
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 2.8e-26 121.7 85 72.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 2.8e-26 121.7 81 70.4
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.6e-26 121.3 81 71.6
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 8.1e-26 120.2 78 70.5
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 8.1e-26 120.2 81 70.4
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 8.1e-26 120.2 83 65.1
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.4e-25 119.4 81 69.1
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.4e-25 119.4 73 75.3
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.8e-25 119.0 83 69.9
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.3e-25 118.6 81 66.7
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 2.3e-25 118.6 79 72.2
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.3e-25 118.6 79 69.6
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.3e-25 118.6 79 69.6
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 3.1e-25 118.2 79 69.6
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.1e-25 118.2 73 75.3
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 3.1e-25 118.2 85 69.4
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 4.0e-25 117.9 83 71.1
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 5.2e-25 117.5 79 67.1
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.8e-25 117.1 79 68.4
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 8.9e-25 116.7 79 67.1
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.5e-24 115.9 82 73.2
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 5.8e-24 114.0 82 61.0
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 9.9e-24 113.2 73 75.3
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.3e-23 112.8 73 74.0
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 2.2e-23 112.1 86 61.6
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.9e-23 111.7 73 72.6
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 3.7e-23 111.3 84 59.5
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 3.7e-23 111.3 83 71.1
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 8.3e-23 110.2 86 65.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 1.1e-22 109.8 84 61.9
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.4e-22 109.4 86 64.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 1.4e-22 109.4 86 64.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 3.2e-22 108.2 86 64.0
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 4.1e-22 107.8 78 69.2
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 7.1e-22 107.1 79 62.0
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 7.1e-22 107.1 82 63.4
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 7.1e-22 107.1 83 62.7
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 9.2e-22 106.7 86 62.8
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 9.2e-22 106.7 83 61.4
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.2e-21 106.3 81 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.1e-21 105.5 83 54.2
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 2.7e-21 105.1 79 57.0
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 3.5e-21 104.8 73 69.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 3.5e-21 104.8 82 61.0
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 6.0e-21 104.0 73 67.1
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.0e-20 103.2 78 66.7
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.0e-20 103.2 82 62.2
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.7e-20 102.4 82 61.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.1e-19 99.8 83 60.2
SEGI_29020 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-19 99.4 73 58.9
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 1.9e-19 99.0 79 55.7
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 5.6e-19 97.4 82 58.5
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 5.6e-19 97.4 67 65.7
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 5.6e-19 97.4 98 52.0
SEGI_22737 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.6e-19 97.4 75 57.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.5e-19 96.7 82 58.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.5e-19 96.7 82 58.5
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 9.5e-19 96.7 78 62.8
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.6e-18 95.9 83 55.4
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 2.8e-18 95.1 74 62.2
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.6e-18 94.7 82 56.1
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 6.2e-18 94.0 83 54.2
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 1.4e-17 92.8 81 56.8
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.4e-17 92.8 81 56.8
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.4e-17 92.8 81 56.8
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.4e-17 92.8 81 56.8
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.4e-17 92.8 81 56.8
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.4e-17 92.8 81 56.8
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 4.0e-17 91.3 82 54.9
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 4.0e-17 91.3 90 53.3
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 4.4e-16 87.8 79 55.7
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 5.8e-16 87.4 80 53.8
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 5.8e-16 87.4 80 53.8
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 9.9e-16 86.7 84 52.4
MCO14G006 Micromonas commoda HOM05D002270 ORTHO05D002866 1.3e-12 76.3 64 46.9
QL05p008973 Quercus lobata HOM05D002270 ORTHO05D001155 3.0e-12 75.1 57 66.7
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 4.0e-09 64.7 74 40.5
SMO141G0121 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 5.3e-09 64.3 44 61.4
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.3e-07 59.7 36 75.0


User provided reference genes

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