Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 4330.8 2254 100.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 0.0e+00 3287.7 2372 74.7
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 0.0e+00 3263.4 2361 74.3
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 0.0e+00 3215.6 2389 73.0
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 2592.8 2420 60.5
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 0.0e+00 2580.4 2393 60.6
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 2580.1 2392 61.1
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 2572.7 2416 60.3
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 0.0e+00 2507.2 2397 59.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 2369.0 2399 55.7
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 2356.6 2424 55.2
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1709.1 2456 43.6
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1682.5 2451 43.1
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1649.0 2507 42.2
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1625.5 2450 42.3
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 0.0e+00 1600.9 2395 41.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1557.7 2427 40.3
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 0.0e+00 1506.5 2418 39.6
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 0.0e+00 1466.8 2431 38.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1454.1 2435 39.5
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 1446.4 2430 39.9
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 0.0e+00 1441.0 2432 38.9
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 0.0e+00 1436.8 2417 38.7
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 1429.5 1495 56.8
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 0.0e+00 1429.1 2427 38.8
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 0.0e+00 1425.6 2509 37.9
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 0.0e+00 1408.7 2442 37.9
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1395.2 2430 38.4
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1390.9 2431 38.0
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 0.0e+00 1384.8 2431 38.7
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 0.0e+00 1370.9 2433 38.3
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 0.0e+00 1366.3 2440 37.8
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1364.0 2427 37.9
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 0.0e+00 1353.2 2508 37.6
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 0.0e+00 1338.6 2470 37.4
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1333.2 2457 37.4
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 0.0e+00 1320.4 2434 37.3
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 0.0e+00 1318.1 2426 37.4
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1300.4 2441 36.4
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 0.0e+00 1270.4 2447 36.4
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 0.0e+00 1263.4 2408 36.6
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1260.4 2445 36.3
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 0.0e+00 1249.6 2457 35.9
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 1247.3 2456 36.4
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1239.9 2457 35.7
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1236.5 2436 36.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 0.0e+00 1236.1 2440 36.4
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 0.0e+00 1234.9 2419 35.1
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 0.0e+00 1228.4 2420 35.4
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1227.6 2458 35.6
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1218.4 2435 35.5
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 0.0e+00 1208.0 2428 35.7
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1207.6 2442 35.2
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 0.0e+00 1186.8 2461 35.1
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 0.0e+00 1186.4 2459 35.4
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 0.0e+00 1176.0 2426 34.5
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 0.0e+00 1163.7 2458 34.0
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 0.0e+00 1146.7 2409 34.2
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 0.0e+00 1135.6 2425 33.6
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 0.0e+00 1131.7 2429 33.8
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1127.5 2438 34.9
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1103.2 2440 34.7
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 0.0e+00 1098.2 2454 33.6
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 0.0e+00 1097.4 2542 32.8
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 0.0e+00 1083.2 2755 31.1
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 0.0e+00 1082.4 2408 34.1
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 0.0e+00 1076.6 2412 34.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 6.8e-310 1068.5 2418 35.3
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.2e-309 1067.8 2407 33.5
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 4.9e-308 1062.4 2426 33.1
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 6.0e-306 1055.4 2414 33.1
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 2.0e-301 1040.4 1152 56.3
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 3.3e-296 1023.1 2412 33.0
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 6.9e-294 1015.4 2414 32.7
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 4.9e-292 1009.2 2438 31.4
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.1e-288 998.0 2448 32.0
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 3.1e-286 989.9 2423 32.2
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 5.3e-286 989.2 2420 32.0
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 5.3e-286 989.2 2404 31.9
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.3e-281 974.5 2415 31.4
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 7.4e-280 968.8 2416 32.0
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.8e-279 966.8 2463 31.4
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.2e-271 940.6 2417 31.2
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-264 918.3 2420 30.7
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 3.3e-264 916.8 750 63.2
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.3e-263 914.8 2426 30.8
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 2.8e-263 913.7 2425 30.6
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.4e-257 894.8 1580 38.7
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 9.1e-254 882.1 2679 29.9
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.6e-250 871.3 1804 35.6
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.5e-245 853.2 2177 32.2
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.3e-241 840.9 2480 29.8
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 2.7e-221 774.2 2406 29.3
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 6.0e-213 746.5 2421 28.1
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.5e-195 688.0 2464 27.4
TPR.G10921 Trifolium pratense HOM05D002270 ORTHO05D002866 2.9e-191 674.5 385 95.6
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 3.6e-186 657.5 1868 29.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 4.2e-182 644.0 2362 27.3
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.2e-181 642.5 2081 29.5
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 3.0e-180 637.9 867 44.6
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.8e-178 630.6 923 41.6
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 5.8e-176 623.6 813 44.3
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 3.7e-162 577.8 468 63.0
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 5.8e-160 570.5 2151 27.3
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-147 529.6 810 39.5
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 3.8e-135 488.0 656 42.4
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 7.2e-134 483.8 993 34.7
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.2e-133 483.0 1199 31.6
C05p38590 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-129 469.9 1711 29.2
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 9.4e-126 456.8 1582 28.6
TPR.G27589 Trifolium pratense HOM05D002270 ORTHO05D016129 7.2e-118 430.6 214 97.7
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.4e-115 421.8 607 41.2
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 2.8e-114 418.7 687 39.2
VMungo0464G1105 Vigna mungo HOM05D002270 ORTHO05D002866 1.5e-110 406.4 436 55.3
SEGI_33198 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 8.9e-108 397.1 1171 30.1
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 1.8e-92 346.3 2407 23.2
Cpa.g.sc1872.2 Carica papaya HOM05D002270 ORTHO05D002866 4.6e-88 331.6 614 37.5
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.5e-83 316.6 2383 22.6
TPR.G40383 Trifolium pratense HOM05D002270 ORTHO05D002866 1.5e-83 316.6 165 93.9
QL93p0356_0058 Quercus lobata HOM05D002270 ORTHO05D002866 1.9e-78 299.7 344 48.8
BolC5t32597H Brassica oleracea HOM05D002270 ORTHO05D002866 2.6e-75 289.3 1257 28.2
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 9.9e-75 287.3 2238 23.0
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 1.5e-70 273.5 1832 21.9
SEGI_22741 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.3e-69 270.4 702 30.3
Psat1g148840 Pisum sativum HOM05D002270 ORTHO05D012184 2.9e-66 259.2 182 75.8
TPR.G39826 Trifolium pratense HOM05D002270 ORTHO05D002866 4.9e-66 258.5 129 95.3
VMungo0366G0001 Vigna mungo HOM05D002270 ORTHO05D002866 2.6e-59 236.1 327 45.6
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 1.1e-57 230.7 541 37.2
ECA067G0001 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.4e-57 230.3 536 31.5
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 6.2e-53 214.9 430 33.3
SEGI_39597 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.9e-52 211.5 720 28.3
SHI16818 Sapria himalayana HOM05D002270 ORTHO05D012099 4.6e-48 198.7 423 32.9
C05p38600 Brassica napus HOM05D002270 ORTHO05D016129 1.8e-44 186.8 478 31.8
Glyma.19G039050 Glycine max HOM05D002270 ORTHO05D016129 5.0e-42 178.7 131 66.4
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 2.5e-38 166.4 271 37.6
SEGI_08864 Sequoiadendron giganteum HOM05D002270 ORTHO05D012099 2.5e-33 149.8 489 27.4
Aqoxy6G02935 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 9.4e-33 147.9 695 25.2
SHI16817 Sapria himalayana HOM05D002270 ORTHO05D002866 4.6e-32 145.6 219 40.6
Psat4g103760 Pisum sativum HOM05D001026 ORTHO05D020973 2.0e-27 130.2 83 74.7
COL.COLO4_12565 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.0e-26 127.9 171 48.5
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 1.0e-26 127.9 614 27.4
BolC5t32598H Brassica oleracea HOM05D002270 ORTHO05D016129 2.9e-26 126.3 253 33.6
Cpa.g.sc30.8 Carica papaya HOM05D002270 ORTHO05D002866 5.0e-26 125.6 137 48.9
PSO675G5043 Papaver somniferum HOM05D010434 ORTHO05D012099 2.0e-22 113.6 501 23.0
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 3.1e-20 106.3 194 40.7
Psat4g085960 Pisum sativum HOM05D001676 ORTHO05D001539 4.1e-20 105.9 68 80.9
Aqoxy6G02934 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 5.3e-20 105.5 225 39.6
COL.COLO4_12566 Corchorus olitorius HOM05D002270 ORTHO05D002866 9.1e-20 104.8 97 54.6
MBI15_g37229_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 2.0e-19 103.6 106 48.1
Rhsim04G0127600 Rhododendron simsii HOM05D002270 ORTHO05D012099 2.0e-19 103.6 157 38.9
BolC5t32599H Brassica oleracea HOM05D002270 ORTHO05D002866 1.5e-17 97.4 191 37.2
TPR.G20824 Trifolium pratense HOM05D002270 ORTHO05D002866 1.9e-17 97.1 52 100.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 5.5e-17 95.5 277 27.8
Nn5g26982 Nelumbo nucifera HOM05D002270 ORTHO05D012099 1.2e-16 94.4 149 40.3
PSO675G4518 Papaver somniferum HOM05D010434 ORTHO05D012099 1.6e-16 94.0 395 24.1
PSO675G7191 Papaver somniferum HOM05D010434 ORTHO05D012099 4.7e-16 92.4 504 22.4
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.0e-16 91.7 314 35.7
PSO541G6407 Papaver somniferum HOM05D010434 ORTHO05D012099 8.0e-16 91.7 395 24.1
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 8.8e-15 88.2 110 41.8
PSO675G1207 Papaver somniferum HOM05D010434 ORTHO05D012099 3.3e-14 86.3 491 23.2
PSO675G5403 Papaver somniferum HOM05D010434 ORTHO05D012099 9.7e-14 84.7 395 23.0
MBI05_g33098_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D030055 8.2e-13 81.6 96 43.8
PSO675G8751 Papaver somniferum HOM05D010434 ORTHO05D012099 8.2e-13 81.6 426 25.1
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.1e-12 79.7 604 25.7
PSO541G0642 Papaver somniferum HOM05D010434 ORTHO05D012099 2.0e-11 77.0 395 22.5
COL.COLO4_12567 Corchorus olitorius HOM05D002270 ORTHO05D044752 3.5e-11 76.3 152 34.2
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-10 74.3 178 33.7
QL01p054500 Quercus lobata HOM05D002270 ORTHO05D002866 2.9e-10 73.2 65 53.8
Lsat_1_v5_gn_9_82220 Lactuca sativa HOM05D002270 ORTHO05D002866 1.5e-09 70.9 133 35.3
Lsat_1_v5_gn_8_57560 Lactuca sativa HOM05D002270 ORTHO05D044752 2.7e-08 66.6 169 29.0
Lsat_1_v5_gn_4_95801 Lactuca sativa HOM05D000640 ORTHO05D229177 4.7e-08 65.9 73 47.9
PSO210G4815 Papaver somniferum HOM05D002270 ORTHO05D002866 1.4e-07 64.3 310 29.0
VMungo0647G1916 Vigna mungo HOM05D000157 ORTHO05D000311 1.4e-07 64.3 74 47.3
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 1.2e-06 61.2 138 36.2
PSO407G0222 Papaver somniferum HOM05D010434 ORTHO05D012099 2.0e-06 60.5 287 24.4
PSO675G8523 Papaver somniferum HOM05D010434 ORTHO05D012099 2.0e-06 60.5 324 21.0


User provided reference genes

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