Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9740 Trifolium pratense HOM05D006918 ORTHO05D008525 5.6e-67 259.6 570 100.0
TPR.G9758 Trifolium pratense HOM05D006918 ORTHO05D008525 9.3e-46 189.1 118 82.2
TPR.G9735 Trifolium pratense HOM05D006918 ORTHO05D008525 6.0e-45 186.4 119 79.8
Medtr2g069680 Medicago truncatula HOM05D006918 ORTHO05D008525 6.4e-39 166.4 121 71.1
Ca_03688_v3 Cicer arietinum L. HOM05D006918 ORTHO05D008525 3.3e-35 154.1 120 67.5
Lj3g0009186 Lotus japonicus HOM05D006918 ORTHO05D008525 3.5e-29 134.0 118 61.0
Psat1g002800 Pisum sativum HOM05D006918 ORTHO05D008525 1.0e-28 132.5 119 60.5
Glyma.08G172400 Glycine max HOM05D006918 ORTHO05D008525 1.5e-27 128.6 120 57.5
Thecc.07G154400 Theobroma cacao HOM05D006918 ORTHO05D008525 2.5e-27 127.9 117 57.3
Haze_08532 Corylus avellana HOM05D006918 ORTHO05D008525 3.3e-27 127.5 117 56.4
Glyma.15G254900 Glycine max HOM05D006918 ORTHO05D008525 3.3e-27 127.5 120 57.5
Lalb_Chr25g0285091 Lupinus albus HOM05D006918 ORTHO05D008525 3.3e-27 127.5 119 55.5
Phvul.005G056300 Phaseolus vulgaris HOM05D006918 ORTHO05D008525 3.3e-27 127.5 120 57.5
Cfa019430 Carpinus fangiana HOM05D006918 ORTHO05D008525 4.3e-27 127.1 117 56.4
VMungo1080G0996 Vigna mungo HOM05D006918 ORTHO05D008525 7.4e-27 126.3 120 57.5
Lalb_Chr01g0007081 Lupinus albus HOM05D006918 ORTHO05D008525 1.6e-26 125.2 119 57.1
CiPaw.12G045100 Carya illinoinensis HOM05D006918 ORTHO05D008525 8.2e-26 122.9 117 54.7
Duzib187G0932 Durio zibethinus HOM05D006918 ORTHO05D008525 6.9e-25 119.8 117 54.7
Duzib187G1351 Durio zibethinus HOM05D006918 ORTHO05D008525 6.9e-25 119.8 117 54.7
CSS0032788 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 2.6e-24 117.9 117 52.1
Dinv19625 Davidia involucrata HOM05D006918 ORTHO05D008525 2.6e-24 117.9 117 52.1
Sabra11G0128500 Salix brachista HOM05D006918 ORTHO05D008525 2.6e-24 117.9 117 53.8
Sabra16G0310000 Salix brachista HOM05D006918 ORTHO05D008525 7.6e-24 116.3 117 52.1
Cpa.g.sc10.35 Carica papaya HOM05D006918 ORTHO05D008525 1.3e-23 115.5 119 53.8
Potri.011G144300 Populus trichocarpa HOM05D006918 ORTHO05D008525 1.3e-23 115.5 117 52.1
ClCG11G016340 Citrullus lanatus HOM05D006918 ORTHO05D008525 1.7e-23 115.2 117 53.0
Potri.001G457300 Populus trichocarpa HOM05D006918 ORTHO05D008525 1.7e-23 115.2 117 53.0
Sc03g0007940 Simmondsia chinensis HOM05D006918 ORTHO05D008525 3.8e-23 114.0 117 52.1
Ah.04g163440 Amaranthus hybridus HOM05D006918 ORTHO05D008525 4.9e-23 113.6 114 55.3
Manes.14G015600 Manihot esculenta HOM05D006918 ORTHO05D008525 4.9e-23 113.6 117 51.3
DCAR_016820 Daucus carota HOM05D006918 ORTHO05D008525 6.5e-23 113.2 119 51.3
Sed0019951 Sechium edule HOM05D006918 ORTHO05D008525 6.5e-23 113.2 117 52.1
Atru.chr12.2189 Acer truncatum HOM05D006918 ORTHO05D008525 8.4e-23 112.8 117 53.0
Gohir.D05G330400 Gossypium hirsutum HOM05D006918 ORTHO05D008525 8.4e-23 112.8 117 52.1
Gorai.009G354800 Gossypium raimondii HOM05D006918 ORTHO05D008525 8.4e-23 112.8 117 52.1
CsaV3_4G031810 Cucumis sativus L. HOM05D006918 ORTHO05D008525 1.4e-22 112.1 117 53.0
Lalb_Chr19g0133401 Lupinus albus HOM05D006918 ORTHO05D008525 2.5e-22 111.3 119 54.6
QL04p074473 Quercus lobata HOM05D006918 ORTHO05D008525 2.5e-22 111.3 117 52.1
EL10Ac4g08564 Beta vulgaris HOM05D006918 ORTHO05D008525 5.5e-22 110.2 114 56.1
MELO3C010560.2 Cucumis melo HOM05D006918 ORTHO05D008525 5.5e-22 110.2 117 52.1
AUR62043059 Chenopodium quinoa HOM05D006918 ORTHO05D008525 7.1e-22 109.8 114 55.3
Ciclev10019503m.g Citrus clementina HOM05D006918 ORTHO05D008525 7.1e-22 109.8 118 54.2
TAR627G0890 Trochodendron aralioides HOM05D006918 ORTHO05D008525 7.1e-22 109.8 110 51.8
Nn7g37872 Nelumbo nucifera HOM05D006918 ORTHO05D008525 9.3e-22 109.4 117 50.4
AUR62044624 Chenopodium quinoa HOM05D006918 ORTHO05D008525 1.6e-21 108.6 114 54.4
Lsat_1_v5_gn_7_72161 Lactuca sativa HOM05D006918 ORTHO05D008525 2.7e-21 107.8 117 49.6
PSO541G4556 Papaver somniferum HOM05D006918 ORTHO05D008525 2.7e-21 107.8 92 56.5
PSO675G9078 Papaver somniferum HOM05D006918 ORTHO05D008525 3.5e-21 107.5 116 49.1
TWI39G1081 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 4.6e-21 107.1 114 49.1
CSS0007445 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 6.0e-21 106.7 117 47.9
Eucgr.F03183 Eucalyptus grandis HOM05D006918 ORTHO05D008525 7.9e-21 106.3 117 49.6
Cc05_g15990 Coffea canephora HOM05D006918 ORTHO05D008525 1.0e-20 105.9 117 49.6
CANSAT56G0998 Cannabis sativa HOM05D006918 ORTHO05D008525 1.3e-20 105.5 117 48.7
Prupe.4G143000 Prunus persica HOM05D006918 ORTHO05D008525 1.8e-20 105.1 117 50.4
CSS0011318 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 3.0e-20 104.4 117 47.0
Lj5C202T5 Lonicera japonica HOM05D006918 ORTHO05D008525 3.0e-20 104.4 122 45.9
RcHm_v2.0_Chr5g0026921 Rosa chinensis HOM05D006918 ORTHO05D008525 3.0e-20 104.4 117 50.4
TWI38G1170 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 5.1e-20 103.6 117 49.6
MD10G1198700 Malus domestica HOM05D006918 ORTHO05D008525 6.7e-20 103.2 117 49.6
Oeu056983.1 Olea europaea HOM05D006918 ORTHO05D008525 6.7e-20 103.2 118 50.8
Migut.M01563 Erythranthe guttata HOM05D006918 ORTHO05D008525 1.1e-19 102.4 117 46.2
FAN21G2086 Fragaria x ananassa HOM05D006918 ORTHO05D008525 3.3e-19 100.9 117 49.6
FAN21G2559 Fragaria x ananassa HOM05D006918 ORTHO05D008525 3.3e-19 100.9 117 49.6
FvH4_3g15990 Fragaria vesca HOM05D006918 ORTHO05D008525 4.3e-19 100.5 117 49.6
FAN11G3197 Fragaria x ananassa HOM05D006918 ORTHO05D008525 4.3e-19 100.5 117 49.6
FAN25G3485 Fragaria x ananassa HOM05D006918 ORTHO05D008525 4.3e-19 100.5 117 48.7
Peaxi162Scf00452g00086 Petunia axillaris HOM05D006918 ORTHO05D008525 4.3e-19 100.5 125 46.4
DCAR_013746 Daucus carota HOM05D006918 ORTHO05D008525 3.7e-18 97.4 113 46.9
HanXRQChr05g0161001 Helianthus annuus HOM05D006918 ORTHO05D008525 4.8e-18 97.1 124 48.4
PGSC0003DMG400022129 Solanum tuberosum HOM05D006918 ORTHO05D008525 8.2e-18 96.3 125 45.6
Nitab4.5_0008437g0030 Nicotiana tabacum HOM05D006918 ORTHO05D008525 1.4e-17 95.5 117 44.4
MD05G1216400 Malus domestica HOM05D006918 ORTHO05D008525 1.8e-17 95.1 117 47.0
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 5.3e-17 93.6 71 59.2
Aqoxy6G01201 Aquilegia oxysepala HOM05D006918 ORTHO05D008525 9.0e-17 92.8 114 43.0
Solyc07g066390.1 Solanum lycopersicum HOM05D006918 ORTHO05D008525 9.0e-17 92.8 125 44.8
Sopen07g034560 Solanum pennellii HOM05D006918 ORTHO05D008525 9.0e-17 92.8 125 44.8
CDE04G0465 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 1.5e-16 92.0 64 62.5
Nitab4.5_0001749g0050 Nicotiana tabacum HOM05D006918 ORTHO05D008525 1.5e-16 92.0 124 43.5
Lj5A202T40 Lonicera japonica HOM05D006918 ORTHO05D008525 2.6e-16 91.3 119 44.5
Dinv42519 Davidia involucrata HOM05D006918 ORTHO05D008525 4.5e-16 90.5 65 61.5
MSTRG.7057 Avicennia marina HOM05D006918 ORTHO05D008525 2.2e-15 88.2 115 43.5
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 2.9e-15 87.8 123 47.2
Rhsim04G0005900 Rhododendron simsii HOM05D006918 ORTHO05D008525 6.5e-15 86.7 120 40.8
CAN.G943.32 Capsicum annuum HOM05D006918 ORTHO05D008525 8.5e-15 86.3 131 41.2
SGA_v2.0_scaffold7G03576 Striga asiatica HOM05D006918 ORTHO05D008525 3.3e-11 74.3 69 49.3
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 9.7e-11 72.8 129 39.5
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 8.2e-10 69.7 121 40.5
BcaC08g47472 Brassica carinata HOM05D006918 ORTHO05D008525 2.4e-09 68.2 117 39.3
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 2.4e-09 68.2 117 39.3
PGR031G3805 Punica granatum HOM05D006918 ORTHO05D008525 2.4e-09 68.2 128 39.1
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 4.1e-09 67.4 117 39.3
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 5.3e-09 67.0 117 39.3
HPP92_013913 Vanilla planifolia HOM05D006918 ORTHO05D008525 4.5e-08 63.9 117 34.2
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 5.9e-08 63.5 130 36.2
HPP92_013983 Vanilla planifolia HOM05D006918 ORTHO05D008525 7.7e-08 63.2 117 34.2
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 1.0e-07 62.8 131 38.2
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 1.7e-07 62.0 129 37.2
BcaB02g08665 Brassica carinata HOM05D006918 ORTHO05D008525 2.9e-07 61.2 118 38.1
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 3.8e-07 60.8 123 35.0
ATR1098G023 Amborella trichopoda HOM05D006918 ORTHO05D008525 5.0e-07 60.5 38 63.2
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 8.5e-07 59.7 130 33.8
BcaNung04908 Brassica carinata HOM05D006918 ORTHO05D008525 2.5e-06 58.2 73 43.8


User provided reference genes

Program Settings