Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 7.0e-150 533.9 259 100.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.5e-131 473.0 266 85.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.1e-130 469.2 259 88.4
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.0e-129 466.8 264 84.8
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.0e-125 452.6 257 83.7
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 9.5e-123 443.7 257 82.5
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 3.6e-122 441.8 273 78.4
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 3.9e-116 421.8 234 85.5
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 5.0e-116 421.4 257 77.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-115 419.9 257 77.4
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.3e-115 418.7 258 76.7
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.3e-115 418.3 258 76.7
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.1e-113 413.7 256 76.2
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.2e-113 411.4 265 75.1
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 2.0e-112 409.5 258 75.2
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.7e-111 405.2 257 74.3
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.9e-111 404.8 256 75.0
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 6.4e-111 404.4 256 73.8
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 8.3e-111 404.1 254 73.6
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.1e-110 403.7 254 72.8
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.2e-110 402.1 253 74.3
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 7.0e-110 401.0 257 73.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 9.2e-110 400.6 256 73.8
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.2e-109 400.2 256 73.4
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.5e-109 398.7 258 73.6
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.5e-109 398.7 253 73.9
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.8e-109 397.5 257 72.8
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.3e-108 396.0 254 70.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 3.9e-108 395.2 254 72.0
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.1e-108 394.8 253 72.7
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-107 393.7 255 71.8
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-107 393.7 255 71.8
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 3.3e-107 392.1 265 70.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.3e-107 392.1 254 71.7
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.3e-107 392.1 264 72.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 4.3e-107 391.7 257 72.0
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 9.5e-107 390.6 254 71.7
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.6e-106 389.8 256 71.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.1e-106 389.4 255 71.8
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.1e-106 389.4 253 71.5
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.8e-105 386.3 260 71.2
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.8e-105 386.3 254 72.0
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.3e-105 386.0 256 71.9
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-105 386.0 255 70.6
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.1e-105 385.6 260 73.1
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.1e-105 385.6 256 71.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.1e-105 385.6 256 71.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.1e-105 385.6 273 68.5
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.0e-105 385.2 256 71.5
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 5.2e-105 384.8 256 72.3
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 8.9e-105 384.0 256 69.5
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 8.9e-105 384.0 254 68.9
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.8e-104 381.3 254 69.7
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 9.9e-104 380.6 257 68.9
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.3e-103 380.2 257 70.4
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.3e-103 380.2 253 68.4
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.9e-103 379.0 254 68.9
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 8.3e-103 377.5 252 70.6
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.4e-102 376.7 261 70.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.4e-102 375.9 260 68.8
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 7.1e-102 374.4 263 67.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 7.1e-102 374.4 255 69.0
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.5e-101 372.1 254 66.9
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 4.6e-101 371.7 254 69.7
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 6.0e-101 371.3 254 67.3
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.0e-101 371.3 255 71.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.0e-100 370.5 254 67.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.3e-100 369.4 259 67.2
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.0e-100 369.0 259 67.2
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.0e-100 369.0 259 67.2
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.0e-100 369.0 254 66.9
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.9e-100 368.6 254 66.9
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.9e-100 368.6 259 67.2
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 6.6e-100 367.9 289 63.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.5e-99 366.7 254 70.5
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.5e-99 365.9 256 70.7
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.3e-99 365.5 254 66.9
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.3e-99 365.5 254 66.9
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 3.3e-99 365.5 262 66.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 3.3e-99 365.5 254 66.5
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 5.6e-99 364.8 260 68.8
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.2e-98 363.6 254 65.0
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.6e-98 363.2 258 66.7
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.1e-98 362.8 254 66.1
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.1e-98 362.8 254 66.1
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.1e-98 362.8 254 66.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.8e-98 362.5 257 65.4
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 3.6e-98 362.1 254 66.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 6.2e-98 361.3 254 65.4
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 8.1e-98 360.9 254 65.7
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.1e-97 360.5 254 67.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.4e-97 360.1 235 73.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.8e-97 359.8 254 67.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.4e-97 359.4 254 66.9
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.4e-97 359.4 260 67.7
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 4.0e-97 358.6 267 63.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 8.9e-97 357.5 253 67.6
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.2e-96 357.1 255 65.1
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.2e-96 357.1 253 65.2
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.2e-96 357.1 254 64.6
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.5e-96 356.7 256 65.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.4e-96 355.5 257 65.0
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 8.4e-95 350.9 211 75.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.9e-94 349.7 182 92.9
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 2.7e-93 345.9 212 74.1
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 4.6e-93 345.1 254 64.2
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 7.8e-93 344.4 314 55.7
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.8e-93 344.4 258 62.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.1e-91 340.5 254 63.8
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.6e-90 336.7 256 61.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.4e-89 333.6 253 61.7
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.2e-88 330.5 211 72.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.3e-87 327.0 195 77.4
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.7e-87 326.6 213 70.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 6.4e-87 324.7 197 77.7
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.4e-86 323.6 258 60.9
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.9e-86 323.2 213 70.0
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.4e-86 322.8 211 71.6
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.2e-86 322.4 235 66.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.7e-84 316.6 271 55.4
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.8e-82 309.3 190 74.7
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 3.6e-82 308.9 243 60.9
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.8e-81 306.6 190 76.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.4e-81 306.2 197 73.6
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.3e-79 300.4 261 53.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.1e-78 297.4 230 60.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 3.9e-76 288.9 256 56.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 8.7e-76 287.7 204 66.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.8e-74 282.7 170 77.1
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.4e-73 280.4 253 53.0
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 3.1e-73 279.3 224 61.2
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.2e-72 277.3 308 50.3
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.6e-72 276.2 360 46.4
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.6e-69 266.9 232 53.4
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-62 243.8 267 52.8
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.0e-60 237.7 180 62.8
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.7e-60 235.0 230 51.3
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.5e-59 233.0 155 69.7
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.4e-54 217.2 179 57.5
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.9e-54 216.9 209 53.1
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 7.4e-51 204.9 178 55.6
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 5.0e-47 192.2 143 67.1
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-46 190.3 126 72.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 6.7e-44 181.8 134 62.7
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-43 180.6 126 69.8
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 4.8e-42 175.6 265 36.6
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.5e-39 165.2 103 74.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.6e-37 160.6 298 34.2
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.8e-34 149.8 96 70.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.8e-34 149.8 174 50.0
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 3.5e-32 142.9 247 34.8
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.2e-31 140.2 128 57.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-27 127.1 193 38.3
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.4e-25 120.9 96 58.3
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.9e-24 115.5 165 38.8
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-19 100.5 76 61.8
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 7.5e-19 98.6 55 83.6
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 7.5e-19 98.6 55 83.6
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.7e-16 90.1 58 69.0
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.7e-16 88.6 80 53.8
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.9e-14 84.0 123 37.4
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 5.5e-14 82.4 55 63.6
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.0e-08 63.9 57 47.4
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 7.8e-08 62.0 51 58.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-07 61.6 41 65.9
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-07 61.6 41 65.9
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.3e-07 60.5 36 75.0
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 9.5e-06 55.1 59 40.7


User provided reference genes

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