Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 0.0e+00 1615.5 864 100.0
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 0.0e+00 1149.0 891 73.1
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 0.0e+00 1134.0 872 72.9
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 0.0e+00 1100.5 884 70.8
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.0e-286 989.2 867 66.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.2e-283 979.9 892 63.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 8.2e-280 967.2 896 63.2
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 4.2e-276 954.9 897 62.2
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 7.5e-273 944.1 912 60.6
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.7e-272 943.0 894 61.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.1e-268 930.2 907 59.2
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.7e-264 915.2 908 57.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 7.3e-244 847.8 899 56.1
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 5.2e-242 841.6 916 52.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.9e-239 833.2 927 54.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.7e-238 829.3 898 52.9
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.3e-236 822.4 852 56.2
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 9.5e-236 820.8 889 53.4
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.2e-235 820.5 897 54.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.8e-234 816.6 930 52.6
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.0e-233 813.1 866 55.3
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 3.0e-229 799.3 924 52.4
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 3.9e-229 798.9 880 54.1
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.1e-228 797.3 908 52.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.7e-227 792.0 920 51.8
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 4.0e-226 788.9 904 52.4
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 2.6e-225 786.2 926 53.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.8e-225 785.0 908 51.9
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.3e-224 783.9 932 51.6
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 4.1e-223 778.9 904 52.2
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 3.5e-222 775.8 891 49.9
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 2.3e-221 773.1 907 52.5
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.1e-220 770.8 894 51.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 8.1e-219 764.6 910 51.0
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-218 764.2 899 53.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.4e-215 753.8 910 52.0
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.9e-215 753.4 909 51.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.4e-215 751.9 909 50.5
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 5.4e-215 751.9 876 51.3
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.6e-214 750.4 899 51.4
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.0e-213 747.7 905 50.5
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.3e-213 746.5 883 50.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 3.0e-213 746.1 903 50.8
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 3.9e-213 745.7 902 50.9
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 5.1e-213 745.3 862 52.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.9e-212 743.4 908 51.1
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.3e-212 742.7 862 52.1
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 9.6e-212 741.1 908 51.2
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-211 740.7 913 50.5
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 4.8e-211 738.8 914 50.1
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.2e-211 738.4 920 50.2
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 8.1e-211 738.0 895 49.9
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 4.0e-210 735.7 903 49.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.6e-209 733.0 920 50.0
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 5.8e-209 731.9 937 48.2
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.3e-208 730.7 879 50.7
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 6.4e-208 728.4 916 49.7
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 5.4e-207 725.3 909 48.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 5.4e-207 725.3 895 49.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.1e-205 718.8 862 50.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 5.1e-205 718.8 917 48.4
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 6.7e-205 718.4 886 49.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.1e-204 717.6 872 51.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.9e-204 716.8 902 48.6
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.3e-204 716.1 911 48.2
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.3e-203 714.1 841 51.6
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.1e-203 713.4 843 50.7
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 4.0e-202 709.1 903 47.8
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.6e-201 706.4 836 51.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.7e-200 703.7 878 50.5
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 4.6e-198 695.7 810 49.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.3e-197 694.1 892 48.8
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.1e-196 691.0 922 47.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.7e-192 677.2 752 52.5
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.4e-191 674.1 893 46.5
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 4.6e-190 669.1 913 46.8
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 1.3e-189 667.5 865 46.5
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.8e-189 667.2 818 48.4
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 8.7e-189 664.8 857 48.7
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.6e-187 660.6 921 45.5
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 4.1e-186 656.0 860 48.3
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.0e-184 651.4 870 47.9
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 2.2e-184 650.2 885 46.9
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.1e-182 643.7 886 46.0
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 2.7e-182 643.3 881 46.3
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 7.9e-182 641.7 896 46.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.7e-180 635.6 880 45.5
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 7.4e-180 635.2 873 45.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 2.8e-179 633.3 888 45.5
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.1e-178 629.8 879 45.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.5e-177 627.5 815 47.6
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.0e-176 622.5 875 45.6
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 8.5e-176 621.7 891 43.4
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 5.5e-175 619.0 878 43.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.2e-174 617.8 839 45.5
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 6.7e-173 612.1 919 43.7
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.0e-172 610.5 867 45.3
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.4e-170 603.6 740 50.5
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-169 600.9 883 43.8
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.6e-169 600.1 909 44.3
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 5.9e-169 599.0 812 45.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 6.7e-165 585.5 839 43.7
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 7.4e-164 582.0 888 42.2
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-162 578.2 896 41.7
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 2.0e-161 573.9 908 41.4
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 7.7e-161 572.0 644 54.3
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.5e-160 568.9 609 52.2
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.8e-157 560.8 865 42.7
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 9.1e-154 548.5 851 43.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.6e-153 547.7 837 47.1
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.2e-152 543.9 913 40.4
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 6.5e-152 542.3 848 41.7
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.0e-149 533.1 835 42.6
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 8.8e-149 531.9 571 53.2
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.3e-144 518.1 835 41.7
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.8e-142 510.4 651 51.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 4.9e-139 499.6 454 61.2
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 2.9e-136 490.3 358 76.5
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-134 484.6 866 40.1
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.9e-131 473.8 873 39.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.3e-120 437.6 1076 35.1
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.3e-115 421.8 391 59.3
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-100 371.3 455 51.0
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.4e-100 370.5 927 34.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.4e-93 348.6 1033 30.4
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-89 334.7 793 33.9
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.1e-82 309.7 229 65.9
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.1e-82 309.7 275 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 2.3e-80 304.7 944 31.2
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.9e-79 301.6 987 29.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-73 282.3 615 36.7
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.4e-69 268.9 339 47.2
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-66 257.7 860 30.0
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 3.2e-66 257.7 860 30.0
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 6.1e-65 253.4 932 29.1
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 6.7e-64 250.0 208 64.4
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.3e-55 221.1 258 50.8
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 9.7e-55 219.5 314 45.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 4.1e-53 214.2 403 38.7
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 4.1e-53 214.2 740 29.3
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.6e-52 211.5 403 38.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-50 206.1 422 38.4
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-50 204.5 412 37.9
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 5.5e-50 203.8 437 34.6
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-47 193.7 364 36.8
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 7.7e-44 183.3 404 37.6
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 2.6e-39 168.3 366 33.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 3.3e-39 167.9 753 27.0
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 5.9e-36 157.1 311 39.2
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 3.8e-35 154.5 309 34.6
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.0e-35 154.1 304 40.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-34 152.9 176 55.7
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 2.5e-34 151.8 171 51.5
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 9.4e-34 149.8 178 50.0
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 8.0e-33 146.7 685 26.6
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-31 142.9 308 32.5
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 2.2e-30 138.7 137 48.9
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-29 136.3 192 43.2
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 7.7e-28 130.2 278 35.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.9e-26 125.6 251 33.1
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 7.2e-26 123.6 278 33.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 9.5e-26 123.2 198 39.9
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-25 122.1 165 46.1
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 4.7e-25 120.9 279 35.1
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 3.0e-24 118.2 278 34.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 6.8e-24 117.1 160 40.0
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.8e-22 111.7 945 23.5
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.5e-20 104.8 128 48.4
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.6e-17 94.7 122 59.0
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 5.6e-10 70.9 84 46.4
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 5.6e-10 70.9 60 56.7
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.7e-09 67.8 258 31.0
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 2.0e-07 62.4 81 44.4


User provided reference genes

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