Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9566 Trifolium pratense HOM05D001406 ORTHO05D002467 1.4e-159 566.2 283 100.0
Psat1g027760 Pisum sativum HOM05D001406 ORTHO05D002467 8.7e-37 158.3 88 85.2
TPR.G21257 Trifolium pratense HOM05D001406 ORTHO05D002467 1.1e-36 157.9 88 85.2
Ca_03165_v3 Cicer arietinum L. HOM05D001406 ORTHO05D002467 1.1e-34 151.4 88 81.8
VMungo1309G2083 Vigna mungo HOM05D001406 ORTHO05D002467 4.5e-33 146.0 88 77.3
Lj1g0002155 Lotus japonicus HOM05D001406 ORTHO05D002467 2.2e-32 143.7 88 73.9
Phvul.009G197400 Phaseolus vulgaris HOM05D001406 ORTHO05D002467 4.2e-31 139.4 88 72.7
Glyma.04G148200 Glycine max HOM05D001406 ORTHO05D002467 5.5e-31 139.0 88 75.0
Glyma.06G217000 Glycine max HOM05D001406 ORTHO05D002467 7.1e-31 138.7 88 75.0
Lalb_Chr13g0301921 Lupinus albus HOM05D001406 ORTHO05D002467 3.9e-29 132.9 87 71.3
arahy.Tifrunner.gnm1.ann1.PHM66I Arachis hypogaea HOM05D001406 ORTHO05D002467 5.1e-29 132.5 88 69.3
CANSAT11G2034 Cannabis sativa HOM05D001406 ORTHO05D002467 8.7e-29 131.7 88 67.0
Lalb_Chr08g0234471 Lupinus albus HOM05D001406 ORTHO05D002467 3.3e-28 129.8 88 70.5
Sed0009507 Sechium edule HOM05D001406 ORTHO05D002467 4.3e-28 129.4 88 65.9
Thecc.09G124900 Theobroma cacao HOM05D001406 ORTHO05D002467 5.6e-28 129.0 88 64.8
Thecc.09G125000 Theobroma cacao HOM05D001406 ORTHO05D002467 5.6e-28 129.0 88 64.8
Lalb_Chr07g0178911 Lupinus albus HOM05D001406 ORTHO05D002467 7.4e-28 128.6 87 67.8
Cfa003360 Carpinus fangiana HOM05D001406 ORTHO05D002467 9.6e-28 128.3 88 68.2
QL02p088143 Quercus lobata HOM05D001406 ORTHO05D002467 1.6e-27 127.5 88 67.0
COL.COLO4_15642 Corchorus olitorius HOM05D001406 ORTHO05D002467 2.1e-27 127.1 88 63.6
Lalb_Chr12g0197871 Lupinus albus HOM05D001406 ORTHO05D002467 2.8e-27 126.7 87 66.7
Duzib150G1321 Durio zibethinus HOM05D001406 ORTHO05D002467 3.7e-27 126.3 88 62.5
Prupe.7G241200 Prunus persica HOM05D001406 ORTHO05D002467 4.8e-27 125.9 88 65.9
Cpa.g.sc75.45 Carica papaya HOM05D001406 ORTHO05D002467 6.2e-27 125.6 88 63.6
CiPaw.04G170400 Carya illinoinensis HOM05D001406 ORTHO05D002467 8.2e-27 125.2 88 65.9
MELO3C010357.2 Cucumis melo HOM05D001406 ORTHO05D002467 8.2e-27 125.2 88 64.8
ClCG06G011010 Citrullus lanatus HOM05D001406 ORTHO05D002467 1.1e-26 124.8 87 64.4
MD02G1033900 Malus domestica HOM05D001406 ORTHO05D002467 1.1e-26 124.8 88 65.9
BcaC07g40054 Brassica carinata HOM05D001406 ORTHO05D002467 1.4e-26 124.4 88 62.5
C08p32730 Brassica napus HOM05D001406 ORTHO05D002467 1.4e-26 124.4 88 62.5
BolC8t50884H Brassica oleracea HOM05D001406 ORTHO05D002467 1.4e-26 124.4 88 62.5
Gohir.A13G199500 Gossypium hirsutum HOM05D001406 ORTHO05D002467 1.4e-26 124.4 88 63.6
Gohir.D13G205000 Gossypium hirsutum HOM05D001406 ORTHO05D002467 1.4e-26 124.4 88 63.6
Gorai.013G233900 Gossypium raimondii HOM05D001406 ORTHO05D002467 1.4e-26 124.4 88 63.6
AT3G57340 Arabidopsis thaliana HOM05D001406 ORTHO05D002467 1.8e-26 124.0 88 62.5
BcaC07g40055 Brassica carinata HOM05D001406 ORTHO05D002467 1.8e-26 124.0 88 62.5
Eucgr.C01157 Eucalyptus grandis HOM05D001406 ORTHO05D002467 2.4e-26 123.6 89 62.9
TAR383G0949 Trochodendron aralioides HOM05D001406 ORTHO05D002467 2.4e-26 123.6 88 63.6
Duzib168G1131 Durio zibethinus HOM05D001406 ORTHO05D002467 4.0e-26 122.9 88 62.5
PGR142G4309 Punica granatum HOM05D001406 ORTHO05D002467 4.0e-26 122.9 88 64.8
A09p50240 Brassica napus HOM05D001406 ORTHO05D002467 5.3e-26 122.5 88 61.4
BraA09t40474Z Brassica rapa HOM05D001406 ORTHO05D002467 5.3e-26 122.5 88 61.4
AL5G38880 Arabidopsis lyrata HOM05D001406 ORTHO05D002467 6.9e-26 122.1 88 61.4
CiPaw.04G170600 Carya illinoinensis HOM05D001406 ORTHO05D002467 9.0e-26 121.7 88 64.8
FAN23G0167 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.5e-25 120.9 88 60.2
FAN28G0695 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.5e-25 120.9 88 60.2
Sp5g05260 Schrenkiella parvula HOM05D001406 ORTHO05D002467 2.0e-25 120.6 88 60.2
THA.LOC104808996 Tarenaya hassleriana HOM05D001406 ORTHO05D002467 2.0e-25 120.6 88 61.4
RcHm_v2.0_Chr2g0088701 Rosa chinensis HOM05D001406 ORTHO05D002467 2.6e-25 120.2 88 60.2
Thhalv10006378m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 3.4e-25 119.8 88 60.2
Manes.14G131700 Manihot esculenta HOM05D001406 ORTHO05D002467 3.4e-25 119.8 88 60.2
Aa31LG10G12230 Aethionema arabicum HOM05D001406 ORTHO05D002467 5.8e-25 119.0 88 58.0
BraA10t45102Z Brassica rapa HOM05D001406 ORTHO05D002467 5.8e-25 119.0 88 59.1
MD15G1174700 Malus domestica HOM05D001406 ORTHO05D002467 5.8e-25 119.0 86 64.0
Atru.chr7.1222 Acer truncatum HOM05D001406 ORTHO05D002467 7.6e-25 118.6 88 56.8
FvH4_1g03490 Fragaria vesca HOM05D001406 ORTHO05D002467 7.6e-25 118.6 88 59.1
Manes.06G049100 Manihot esculenta HOM05D001406 ORTHO05D002467 7.6e-25 118.6 88 59.1
CARHR167530 Cardamine hirsuta HOM05D001406 ORTHO05D002467 1.0e-24 118.2 88 60.2
FAN26G0469 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.3e-24 117.9 85 60.0
FAN26G3043 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.3e-24 117.9 85 60.0
PSO455G0120 Papaver somniferum HOM05D001406 ORTHO05D002467 1.7e-24 117.5 85 60.0
TWI63G0689 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 1.7e-24 117.5 88 58.0
BcaC06g32351 Brassica carinata HOM05D001406 ORTHO05D002467 2.2e-24 117.1 88 58.0
C09p71080 Brassica napus HOM05D001406 ORTHO05D002467 2.2e-24 117.1 88 58.0
BolC9t59872H Brassica oleracea HOM05D001406 ORTHO05D002467 2.2e-24 117.1 88 58.0
PSO170G1851 Papaver somniferum HOM05D001406 ORTHO05D002467 2.2e-24 117.1 88 58.0
Zm00001eb342290 Zea mays HOM05D001406 ORTHO05D002467 2.2e-24 117.1 88 60.2
Rhsim01G0073200 Rhododendron simsii HOM05D001406 ORTHO05D002467 2.9e-24 116.7 88 62.5
Rhsim01G0073900 Rhododendron simsii HOM05D001406 ORTHO05D002467 2.9e-24 116.7 88 62.5
A10p30620 Brassica napus HOM05D001406 ORTHO05D002467 3.8e-24 116.3 88 58.0
Ciclev10008750m.g Citrus clementina HOM05D001406 ORTHO05D002467 3.8e-24 116.3 88 59.1
BcaC06g32284 Brassica carinata HOM05D001406 ORTHO05D002467 4.9e-24 115.9 88 55.7
BcaNung06180 Brassica carinata HOM05D001406 ORTHO05D002467 4.9e-24 115.9 88 55.7
Zm00001eb162560 Zea mays HOM05D001406 ORTHO05D002467 4.9e-24 115.9 88 59.1
Sed0020689 Sechium edule HOM05D001406 ORTHO05D002467 8.4e-24 115.2 88 59.1
MELO3C010356.2 Cucumis melo HOM05D001406 ORTHO05D002467 1.1e-23 114.8 88 59.1
FAN19G3152 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.1e-23 114.8 87 57.5
Os01g0556400 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D002467 1.1e-23 114.8 88 61.4
Ciclev10017189m.g Citrus clementina HOM05D001406 ORTHO05D002467 1.9e-23 114.0 88 58.0
Sp6g37150 Schrenkiella parvula HOM05D001406 ORTHO05D002467 2.5e-23 113.6 88 55.7
GSVIVG01015518001 Vitis vinifera HOM05D001406 ORTHO05D002467 2.5e-23 113.6 129 48.1
Carub.0006s0465 Capsella rubella HOM05D001406 ORTHO05D002467 3.2e-23 113.2 88 55.7
CARHR207530 Cardamine hirsuta HOM05D001406 ORTHO05D002467 3.2e-23 113.2 88 55.7
CsaV3_1G029930 Cucumis sativus L. HOM05D001406 ORTHO05D002467 5.5e-23 112.5 88 56.8
Thhalv10015797m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 5.5e-23 112.5 88 52.3
vmacro20547 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 9.3e-23 111.7 88 59.1
Sabra06G0121700 Salix brachista HOM05D001406 ORTHO05D002467 1.2e-22 111.3 88 54.5
Carub.0005s2419 Capsella rubella HOM05D001406 ORTHO05D002467 1.6e-22 110.9 88 55.7
Peaxi162Scf00256g00024 Petunia axillaris HOM05D001406 ORTHO05D002467 2.1e-22 110.5 88 56.8
DCAR_014879 Daucus carota HOM05D001406 ORTHO05D002467 3.5e-22 109.8 87 56.3
Aqoxy7G03718 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 4.6e-22 109.4 87 52.9
TWI34G0992 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 6.0e-22 109.0 88 53.4
Dinv41518 Davidia involucrata HOM05D001406 ORTHO05D002467 7.9e-22 108.6 87 55.2
Potri.006G153700 Populus trichocarpa HOM05D001406 ORTHO05D002467 7.9e-22 108.6 88 53.4
Nitab4.5_0001941g0060 Nicotiana tabacum HOM05D001406 ORTHO05D002467 1.3e-21 107.8 88 54.5
Oeu018465.1 Olea europaea HOM05D001406 ORTHO05D002467 1.3e-21 107.8 88 55.7
HPP92_021813 Vanilla planifolia HOM05D001406 ORTHO05D002467 1.3e-21 107.8 88 55.7
TAR636G2776 Trochodendron aralioides HOM05D001406 ORTHO05D002467 1.8e-21 107.5 88 55.7
CSS0022258 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 2.3e-21 107.1 88 55.7
CSS0043323 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 2.3e-21 107.1 88 55.7
DCAR_009194 Daucus carota HOM05D001406 ORTHO05D002467 6.7e-21 105.5 87 55.2
CAN.G975.5 Capsicum annuum HOM05D001406 ORTHO05D002467 8.7e-21 105.1 88 53.4
Actinidia26396 Actinidia chinensis HOM05D001406 ORTHO05D002467 1.1e-20 104.8 88 54.5
CSS0015980 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 1.1e-20 104.8 88 55.7
Lsat_1_v5_gn_7_45581 Lactuca sativa HOM05D001406 ORTHO05D002467 1.9e-20 104.0 88 53.4
CSS0015754 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 2.5e-20 103.6 88 55.7
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-20 103.6 85 55.3
Rhsim03G0247800 Rhododendron simsii HOM05D001406 ORTHO05D002467 4.3e-20 102.8 88 56.8
Hma1.2p1_0018F.1_g012510 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 5.7e-20 102.4 88 56.8
HPP92_019940 Vanilla planifolia HOM05D000315 ORTHO05D001379 5.7e-20 102.4 88 51.1
Dinv36534 Davidia involucrata HOM05D001406 ORTHO05D002467 1.3e-19 101.3 88 54.5
Hma1.2p1_0665F.1_g199020 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 1.3e-19 101.3 87 55.2
unitig_37.g12038 Utricularia gibba HOM05D001406 ORTHO05D002467 2.2e-19 100.5 88 56.8
PGSC0003DMG400014967 Solanum tuberosum HOM05D001406 ORTHO05D002467 3.7e-19 99.8 88 51.1
Migut.G00775 Erythranthe guttata HOM05D001406 ORTHO05D002467 4.8e-19 99.4 88 52.3
HanXRQChr09g0242301 Helianthus annuus HOM05D001406 ORTHO05D002467 4.8e-19 99.4 88 51.1
SalBow8G4782 Salvia bowleyana HOM05D001406 ORTHO05D002467 8.2e-19 98.6 88 55.7
Solyc05g018610.3 Solanum lycopersicum HOM05D001406 ORTHO05D002467 1.1e-18 98.2 88 50.0
Sopen05g015780 Solanum pennellii HOM05D001406 ORTHO05D002467 1.4e-18 97.8 88 50.0
ATR0322G047 Amborella trichopoda HOM05D001406 ORTHO05D002467 2.4e-18 97.1 88 50.0
Thecc.09G125100 Theobroma cacao HOM05D001406 ORTHO05D002467 2.4e-18 97.1 87 54.0
ECA240G1205 Erigeron canadensis HOM05D001406 ORTHO05D002467 5.3e-18 95.9 88 51.1
vmacro06126 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 5.3e-18 95.9 88 48.9
CDE07G1801 Ceratophyllum demersum HOM05D001406 ORTHO05D002467 6.9e-18 95.5 88 51.1
Lsat_1_v5_gn_5_97200 Lactuca sativa HOM05D001406 ORTHO05D002467 9.0e-18 95.1 87 50.6
MSTRG.9792 Avicennia marina HOM05D001406 ORTHO05D002467 3.4e-17 93.2 88 50.0
SGA_v2.0_scaffold102G29906 Striga asiatica HOM05D001406 ORTHO05D002467 3.4e-17 93.2 88 50.0
Aqoxy7G02164 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 2.2e-16 90.5 86 48.8
Ciclev10003237m.g Citrus clementina HOM05D001406 ORTHO05D002467 7.2e-15 85.5 70 58.6
SEGI_07828 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 3.0e-13 80.1 86 50.0
SMO367G0943 Selaginella moellendorffii HOM05D001406 ORTHO05D002467 3.3e-12 76.6 88 46.6
Rhsim07G0188800 Rhododendron simsii HOM05D001406 ORTHO05D002467 9.7e-12 75.1 89 44.9
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 2.2e-11 73.9 85 45.9
Sopen12g034180 Solanum pennellii HOM05D001406 ORTHO05D002467 2.2e-11 73.9 85 45.9
PGSC0003DMG400004706 Solanum tuberosum HOM05D001406 ORTHO05D002467 2.8e-11 73.6 85 45.9
SHI35811 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-10 71.2 83 49.4
Ca_01927_v3 Cicer arietinum L. HOM05D001406 ORTHO05D002467 1.8e-10 70.9 85 43.5
VMungo1309G0376 Vigna mungo HOM05D001406 ORTHO05D002467 3.1e-10 70.1 85 45.9
GSVIVG01035148001 Vitis vinifera HOM05D001406 ORTHO05D002467 4.1e-10 69.7 83 45.8
Phvul.009G248900 Phaseolus vulgaris HOM05D001406 ORTHO05D002467 5.3e-10 69.3 85 44.7
CDE06G0959 Ceratophyllum demersum HOM05D001406 ORTHO05D002467 1.5e-09 67.8 70 50.0
Manes.03G196600 Manihot esculenta HOM05D001406 ORTHO05D002467 2.6e-09 67.0 86 41.9
PSO210G0019 Papaver somniferum HOM05D001406 ORTHO05D002467 2.6e-09 67.0 86 41.9
arahy.Tifrunner.gnm1.ann1.GX02YE Arachis hypogaea HOM05D001406 ORTHO05D002467 3.4e-09 66.6 85 41.2
arahy.Tifrunner.gnm1.ann1.I6XRGW Arachis hypogaea HOM05D001406 ORTHO05D002467 3.4e-09 66.6 85 41.2
PSO832G1852 Papaver somniferum HOM05D001406 ORTHO05D002467 3.4e-09 66.6 86 40.7
Medtr2g436560 Medicago truncatula HOM05D001406 ORTHO05D002467 4.5e-09 66.2 85 41.2
Nn3g21477 Nelumbo nucifera HOM05D001406 ORTHO05D002467 4.5e-09 66.2 83 42.2
DCAR_030522 Daucus carota HOM05D001406 ORTHO05D002467 5.9e-09 65.9 85 41.2
Glyma.09G044000 Glycine max HOM05D001406 ORTHO05D002467 5.9e-09 65.9 85 43.5
Glyma.15G149100 Glycine max HOM05D001406 ORTHO05D002467 7.7e-09 65.5 85 44.7
TWI09G0395 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 7.7e-09 65.5 82 43.9
CANSAT78G0821 Cannabis sativa HOM05D001406 ORTHO05D002467 2.9e-08 63.5 82 43.9
Psat1g154960 Pisum sativum HOM05D001406 ORTHO05D002467 2.9e-08 63.5 85 38.8
Rhsim07G0188700 Rhododendron simsii HOM05D001406 ORTHO05D000023 2.9e-08 63.5 115 31.3
SEGI_39155 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 2.9e-08 63.5 74 47.3
SHI03492 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-08 63.2 87 43.7
vmacro15226 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 5.0e-08 62.8 85 40.0
TPR.G22355 Trifolium pratense HOM05D001406 ORTHO05D002467 6.5e-08 62.4 85 38.8
Sabra10G0008400 Salix brachista HOM05D001406 ORTHO05D002467 1.2e-06 58.2 83 38.6
MELO3C021324.2 Cucumis melo HOM05D001406 ORTHO05D002467 1.6e-06 57.8 88 39.8
Potri.010G013200 Populus trichocarpa HOM05D001406 ORTHO05D002467 4.7e-06 56.2 83 39.8
CsaV3_1G003880 Cucumis sativus L. HOM05D001406 ORTHO05D002467 7.9e-06 55.5 86 38.4


User provided reference genes

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