Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9361 Trifolium pratense HOM05D000533 ORTHO05D001069 2.8e-58 228.4 117 100.0
CAN.G378.10 Capsicum annuum HOM05D000533 ORTHO05D001069 6.6e-23 110.9 103 60.2
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 2.5e-22 109.0 104 59.6
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.5e-22 109.0 104 59.6
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 2.5e-22 109.0 104 58.7
Atru.chr2.908 Acer truncatum HOM05D000533 ORTHO05D001069 3.3e-22 108.6 54 98.1
ClCG07G012690 Citrullus lanatus HOM05D000533 ORTHO05D001069 3.3e-22 108.6 54 98.1
ClCG11G009630 Citrullus lanatus HOM05D000533 ORTHO05D001069 3.3e-22 108.6 54 98.1
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 3.3e-22 108.6 54 98.1
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.3e-22 108.6 104 58.7
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 3.3e-22 108.6 104 58.7
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 3.3e-22 108.6 104 58.7
Medtr2g451380 Medicago truncatula HOM05D000533 ORTHO05D001069 3.3e-22 108.6 104 58.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.3e-22 108.6 104 58.7
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 3.3e-22 108.6 104 58.7
Psat7g126800 Pisum sativum HOM05D000533 ORTHO05D001069 3.3e-22 108.6 54 98.1
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 3.3e-22 108.6 54 98.1
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 3.3e-22 108.6 72 76.4
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 54 96.3
CAN.G1470.8 Capsicum annuum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 54 96.3
Peaxi162Scf00133g00521 Petunia axillaris HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 57.7
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 58.7
Potri.013G074650 Populus trichocarpa HOM05D000533 ORTHO05D001069 4.3e-22 108.2 84 65.5
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 58.7
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 58.7
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 58.7
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 57.7
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 57.7
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 57.7
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.3e-22 108.2 104 57.7
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 5.6e-22 107.8 92 63.0
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 5.6e-22 107.8 104 57.7
Ah.10g027020 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 57.7
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 58.7
RcHm_v2.0_Chr3g0470811 Rosa chinensis HOM05D000533 ORTHO05D001069 7.3e-22 107.5 104 58.7
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 9.5e-22 107.1 104 58.7
Phvul.004G015300 Phaseolus vulgaris HOM05D000533 ORTHO05D001069 9.5e-22 107.1 54 96.3
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 9.5e-22 107.1 104 58.7
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 9.5e-22 107.1 54 96.3
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BolSC35t60688H Brassica oleracea HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BraSC138t45531Z Brassica rapa HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
CAN.G965.3 Capsicum annuum HOM05D000533 ORTHO05D001069 1.2e-21 106.7 103 57.3
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.2e-21 106.7 54 96.3
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 57.7
Lj2C1238G31 Lonicera japonica HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 58.7
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 1.2e-21 106.7 104 58.7
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr00c0504g0575331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr17g0557731 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
Lsat_1_v5_gn_4_118061 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
Lsat_1_v5_gn_5_66001 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.3 54 96.3
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
Lsat_1_v5_gn_8_137301 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.6e-21 106.3 54 96.3
Nn029s41575 Nelumbo nucifera HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 1.6e-21 106.3 104 57.7
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 2.8e-21 105.5 54 96.3
BolC9t56912H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-21 105.1 104 56.7
Lalb_Chr25g0284051 Lupinus albus HOM05D000533 ORTHO05D001069 3.6e-21 105.1 54 94.4
BolC9t56921H Brassica oleracea HOM05D000533 ORTHO05D001069 4.7e-21 104.8 104 56.7
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 4.7e-21 104.8 104 56.7
Medtr1g041540 Medicago truncatula HOM05D000533 ORTHO05D001069 4.7e-21 104.8 54 92.6
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 6.2e-21 104.4 104 56.7
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.2e-21 104.4 54 92.6
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.2e-21 104.4 54 92.6
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.0e-21 104.0 103 57.3
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 8.0e-21 104.0 103 58.3
Oeu015129.1 Olea europaea HOM05D000533 ORTHO05D001069 1.4e-20 103.2 104 56.7
Gohir.1Z050466 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.8e-20 102.8 104 56.7
Sopen04g017430 Solanum pennellii HOM05D000533 ORTHO05D001069 3.1e-20 102.1 109 52.3
Hund28343 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.0e-20 101.7 103 55.3
Hund29094 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.0e-20 101.7 103 55.3
Hund30658 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.0e-20 101.7 103 55.3
Hund30925 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.0e-20 101.7 103 55.3
Lsat_1_v5_gn_5_124461 Lactuca sativa HOM05D000533 ORTHO05D001069 6.8e-20 100.9 113 52.2
Lsat_1_v5_gn_6_87021 Lactuca sativa HOM05D000533 ORTHO05D001069 6.8e-20 100.9 104 53.8
Mapoly0048s0044 Marchantia polymorpha HOM05D000533 ORTHO05D001069 6.8e-20 100.9 54 88.9
SEGI_05748 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 6.8e-20 100.9 54 88.9
SEGI_26516 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 6.8e-20 100.9 54 88.9
TPR.G30414 Trifolium pratense HOM05D000533 ORTHO05D001069 2.0e-19 99.4 54 90.7
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 2.6e-19 99.0 92 59.8
Nitab4.5_0000843g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.6e-19 99.0 52 90.4
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.7e-18 96.3 103 52.4
Glyma.18G155701 Glycine max HOM05D000533 ORTHO05D001069 2.9e-18 95.5 111 52.3
Nitab4.5_0006409g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.9e-18 95.5 54 87.0
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.9e-18 95.5 54 85.2
Solyc08g022170.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.9e-18 95.5 54 85.2
TPR.G15418 Trifolium pratense HOM05D000533 ORTHO05D001069 6.4e-18 94.4 51 90.2
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-16 89.4 45 93.3
arahy.Tifrunner.gnm1.ann1.JUM97N Arachis hypogaea HOM05D000533 ORTHO05D001069 2.7e-16 89.0 79 60.8
HanXRQChr01g0000281 Helianthus annuus HOM05D000533 ORTHO05D001069 1.3e-15 86.7 44 95.5
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 6.6e-15 84.3 111 44.1
Gorai.009G313900 Gossypium raimondii HOM05D000533 ORTHO05D001069 8.6e-15 84.0 90 51.1
Hund17906 Selenicereus undatus HOM05D000533 ORTHO05D001069 4.3e-14 81.6 62 67.7
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 7.3e-14 80.9 54 72.2
SMO086G0066 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 7.3e-14 80.9 54 72.2
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 6.2e-13 77.8 145 38.6
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 1.4e-12 76.6 37 91.9
Lalb_Chr15g0080701 Lupinus albus HOM05D000533 ORTHO05D001069 1.4e-12 76.6 86 48.8
Psat5g037760 Pisum sativum HOM05D000533 ORTHO05D001069 1.8e-12 76.3 85 49.4
Gohir.A01G140323 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.3e-12 75.9 39 97.4
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.3e-12 75.9 39 97.4
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 3.1e-12 75.5 39 94.9
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 3.1e-12 75.5 39 94.9
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 5.2e-12 74.7 42 85.7
DCAR_005908 Daucus carota HOM05D000533 ORTHO05D001069 6.8e-12 74.3 36 94.4
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 6.8e-12 74.3 39 94.9
Lalb_Chr20g0116591 Lupinus albus HOM05D000533 ORTHO05D001069 1.5e-11 73.2 46 78.3
BraSC59t46530Z Brassica rapa HOM05D000533 ORTHO05D001069 7.5e-11 70.9 36 97.2
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 2.2e-10 69.3 36 94.4
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.1e-09 67.0 36 91.7
EL10Ac8g19820 Beta vulgaris HOM05D000533 ORTHO05D001069 5.4e-09 64.7 33 97.0
Solyc11g021237.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.2e-09 63.9 36 86.1
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 1.2e-08 63.5 80 47.5
SEGI_11816 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.2e-08 63.5 36 86.1
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.6e-08 63.2 39 82.1
HanXRQChr11g0321231 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-08 63.2 39 82.1
Gorai.004G123700 Gossypium raimondii HOM05D000533 ORTHO05D001069 4.6e-08 61.6 52 63.5
Nitab4.5_0007400g0140 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.6e-08 61.6 80 43.8
BolC7t43858H Brassica oleracea HOM05D000533 ORTHO05D001069 6.0e-08 61.2 79 45.6
Medtr4g117480 Medicago truncatula HOM05D000533 ORTHO05D001069 4.3e-06 55.1 38 71.1
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 7.3e-06 54.3 33 78.8


User provided reference genes

Program Settings