Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1620.5 795 100.0
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1500.3 798 92.4
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1466.8 796 91.0
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1462.2 797 90.3
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1382.1 800 85.0
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1362.4 792 85.1
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1359.7 753 87.6
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1359.0 792 84.1
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1348.6 745 86.7
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1335.9 773 84.6
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1273.5 804 76.5
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1271.5 753 80.9
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1270.4 768 79.3
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1268.8 764 78.7
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1266.9 761 79.5
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1257.3 806 76.3
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1255.7 809 75.4
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1255.4 750 79.6
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1254.6 753 79.8
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1249.2 749 79.4
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1247.3 805 75.0
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1245.3 805 75.2
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 805 74.7
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1236.9 799 76.6
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1234.2 769 77.1
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1233.4 750 78.9
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1233.0 798 75.7
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1231.5 794 75.4
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1230.7 760 77.9
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1229.9 704 84.8
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1229.2 745 77.9
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1229.2 804 74.9
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1226.8 763 77.6
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1223.0 744 76.9
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 746 76.3
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1218.4 761 76.5
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1218.0 764 76.4
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 740 77.2
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 805 73.4
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1209.5 745 77.7
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1208.4 774 74.7
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1208.4 821 72.5
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1208.0 796 73.6
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 789 74.3
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1203.3 745 76.1
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1202.2 762 76.6
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 743 76.2
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1196.4 774 75.7
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1195.6 742 76.1
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 755 75.2
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1192.2 765 74.9
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1191.8 748 75.1
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1191.8 740 75.9
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 740 75.5
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1189.5 819 71.3
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 739 75.4
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 743 74.8
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 757 75.3
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1178.3 748 74.5
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 743 75.4
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 803 70.5
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1168.3 751 74.0
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 800 70.5
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1166.0 740 75.1
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1164.1 740 74.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1163.3 806 70.3
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1162.1 811 69.4
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1161.7 774 72.1
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 799 70.5
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1160.6 777 72.1
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 799 69.8
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1158.3 807 70.0
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1154.0 751 73.2
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1153.7 689 80.6
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1153.3 751 72.3
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1137.5 833 67.7
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1137.1 765 71.8
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1135.6 769 73.3
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1125.5 760 70.9
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1115.5 686 77.0
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1112.1 774 68.9
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1100.9 770 71.3
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1100.9 802 66.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1094.0 789 68.4
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 5.4e-312 1074.7 752 70.3
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 1.1e-311 1073.2 695 73.2
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 2.2e-311 1072.0 663 78.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 1.1e-310 1069.7 805 65.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 3.4e-304 1048.1 685 73.1
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 1.7e-300 1035.8 745 67.7
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.5e-299 1031.9 610 83.1
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 9.5e-299 1030.0 625 79.0
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.3e-295 1019.6 830 63.0
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 7.3e-283 977.2 745 60.8
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 6.2e-282 974.2 747 61.4
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 2.5e-275 952.2 746 59.5
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 8.1e-258 894.0 640 66.9
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 1.7e-247 859.8 628 65.4
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 9.7e-243 844.0 689 63.1
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-224 782.3 678 55.5
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.8e-212 743.4 525 68.0
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 9.2e-169 598.2 783 41.6
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 6.6e-151 538.9 354 67.5
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 3.4e-147 526.6 601 50.6
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 3.7e-125 453.4 302 69.2
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.5e-99 367.1 289 69.2
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 2.6e-94 350.9 269 63.2
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.4e-87 328.6 225 74.2
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.0e-82 310.1 259 64.9
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 7.5e-62 243.0 148 76.4
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 5.8e-54 216.9 138 76.8
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.1e-49 202.6 122 77.0
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.3e-41 174.1 127 63.8
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 2.7e-35 154.8 110 65.5
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 1.4e-28 132.5 159 47.2
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 3.3e-25 121.3 94 59.6
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 2.1e-24 118.6 109 51.4
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.4e-20 105.9 105 57.1
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 5.1e-18 97.4 62 74.2
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 2.5e-17 95.1 56 82.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.4e-12 79.3 43 79.1
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.9e-12 79.0 36 94.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.3e-08 66.2 41 75.6
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.8e-07 62.4 74 50.0
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.4e-06 58.2 38 76.3


User provided reference genes

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