Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.6e-42 175.6 84 100.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 4.7e-23 110.9 79 64.6
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 6.2e-23 110.5 77 66.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 8.1e-23 110.2 79 64.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.1e-22 109.8 79 63.3
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 4.0e-22 107.8 79 63.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.0e-21 105.5 77 62.3
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 7.5e-21 103.6 77 62.3
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.3e-20 102.8 80 62.5
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.1e-19 97.8 77 62.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 7.1e-19 97.1 77 58.4
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.6e-18 95.9 77 58.4
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 6.0e-18 94.0 78 60.3
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.0e-18 94.0 87 52.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 7.8e-18 93.6 76 57.9
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 5.1e-17 90.9 81 55.6
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.5e-16 89.4 78 59.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.9e-16 89.0 77 55.8
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.9e-16 89.0 77 55.8
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 3.3e-16 88.2 80 55.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 5.6e-16 87.4 80 55.0
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 5.6e-16 87.4 81 51.9
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 5.6e-16 87.4 74 58.1
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 9.5e-16 86.7 77 54.5
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.6e-15 84.7 84 54.8
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.1e-14 83.2 84 53.6
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.4e-14 82.8 85 51.8
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.4e-14 82.8 85 51.8
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.8e-14 82.4 84 53.6
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.4e-14 82.0 88 46.6
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 8.9e-14 80.1 83 51.8
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 8.9e-14 80.1 75 54.7
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.2e-13 79.7 83 51.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.5e-13 79.3 83 50.6
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.5e-13 79.3 82 53.7
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.5e-13 79.3 80 50.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.6e-13 78.6 83 49.4
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.6e-13 78.6 84 50.0
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.4e-13 78.2 80 50.0
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.4e-13 77.8 85 51.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 5.8e-13 77.4 83 49.4
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 5.8e-13 77.4 88 50.0
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 5.8e-13 77.4 84 45.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 5.8e-13 77.4 84 45.2
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 5.8e-13 77.4 79 49.4
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 7.6e-13 77.0 85 50.6
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 7.6e-13 77.0 85 50.6
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 7.6e-13 77.0 85 50.6
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 7.6e-13 77.0 85 50.6
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 7.6e-13 77.0 85 50.6
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 7.6e-13 77.0 85 50.6
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 7.6e-13 77.0 83 48.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 9.9e-13 76.6 85 50.6
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.3e-12 76.3 84 50.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.3e-12 76.3 85 50.6
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.2e-12 75.5 84 51.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.9e-12 75.1 84 47.6
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.9e-12 75.1 84 41.7
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.9e-12 74.3 83 49.4
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.9e-12 74.3 83 49.4
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 4.9e-12 74.3 83 49.4
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.4e-12 73.9 84 41.7
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 8.4e-12 73.6 67 56.7
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 8.4e-12 73.6 81 43.2
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 8.4e-12 73.6 80 45.0
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-11 73.2 82 51.2
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-11 72.8 79 51.9
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-11 72.8 79 51.9
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-11 72.8 79 51.9
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.4e-11 72.8 81 45.7
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.4e-11 72.8 83 41.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.9e-11 72.4 79 51.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.9e-11 72.4 82 42.7
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 2.4e-11 72.0 65 56.9
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 2.4e-11 72.0 80 45.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.4e-11 72.0 80 45.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 3.2e-11 71.6 79 50.6
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 3.2e-11 71.6 65 56.9
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 4.1e-11 71.2 66 51.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 5.4e-11 70.9 82 47.6
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 5.4e-11 70.9 80 46.2
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 7.1e-11 70.5 84 41.7
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 9.2e-11 70.1 82 45.1
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 9.2e-11 70.1 53 60.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.2e-10 69.7 80 47.5
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 1.2e-10 69.7 83 45.8
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.2e-10 69.7 80 46.2
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.2e-10 69.7 80 46.2
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.2e-10 69.7 80 45.0
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.6e-10 69.3 82 41.5
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.1e-10 68.9 80 46.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.1e-10 68.9 80 46.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.1e-10 68.9 80 46.2
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 3.5e-10 68.2 82 41.5
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 3.5e-10 68.2 67 53.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 3.5e-10 68.2 78 46.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.8e-10 67.0 80 42.5
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 7.8e-10 67.0 87 40.2
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.0e-09 66.6 76 42.1
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.0e-09 66.6 74 47.3
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.3e-09 66.2 87 37.9
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.0e-09 65.1 82 41.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 3.0e-09 65.1 83 43.4
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.0e-09 65.1 82 36.6
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 5.1e-09 64.3 87 37.9
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 5.6e-08 60.8 59 49.2
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.3e-08 60.5 93 35.5
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 7.3e-08 60.5 70 38.6
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.8e-07 58.5 92 32.6
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.8e-07 58.5 57 49.1
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 3.6e-07 58.2 58 39.7
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 4.7e-07 57.8 55 43.6
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 4.7e-07 57.8 82 35.4
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.1e-06 56.6 82 36.6
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.4e-06 56.2 85 34.1
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.4e-06 56.2 85 35.3
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.4e-06 56.2 85 34.1
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.4e-06 55.5 75 40.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 5.2e-06 54.3 87 37.9
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 5.2e-06 54.3 42 50.0


User provided reference genes

Program Settings