Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G908 Trifolium pratense HOM05D000861 ORTHO05D001799 1.5e-37 159.1 81 100.0
TPR.G31109 Trifolium pratense HOM05D000861 ORTHO05D001799 6.2e-20 100.5 50 100.0
TPR.G32296 Trifolium pratense HOM05D000861 ORTHO05D001799 6.2e-20 100.5 50 100.0
Psat5g174960 Pisum sativum HOM05D000861 ORTHO05D001799 3.1e-11 71.6 52 73.1
Lj1g0014118 Lotus japonicus HOM05D000861 ORTHO05D001799 4.0e-11 71.2 50 70.0
Psat0s2632g0040 Pisum sativum HOM05D000861 ORTHO05D001799 6.8e-11 70.5 51 70.6
Ca_00569_v3 Cicer arietinum L. HOM05D000861 ORTHO05D001799 4.4e-10 67.8 52 67.3
Ca_00170_v3 Cicer arietinum L. HOM05D000861 ORTHO05D001799 9.9e-10 66.6 52 67.3
Ca_18105_v3 Cicer arietinum L. HOM05D000861 ORTHO05D001799 9.9e-10 66.6 52 65.4
Psat6g110320 Pisum sativum HOM05D000861 ORTHO05D001799 1.3e-09 66.2 50 64.0
Ca_00568_v3 Cicer arietinum L. HOM05D000861 ORTHO05D001799 2.2e-09 65.5 52 65.4
Lj5g0007588 Lotus japonicus HOM05D000861 ORTHO05D001799 2.2e-09 65.5 45 68.9
Medtr1g054310 Medicago truncatula HOM05D000861 ORTHO05D001799 3.7e-09 64.7 50 64.0
Phvul.007G264200 Phaseolus vulgaris HOM05D000861 ORTHO05D001799 6.4e-09 63.9 47 66.0
Glyma.12G201900 Glycine max HOM05D000861 ORTHO05D001799 1.4e-08 62.8 37 73.0
Phvul.005G107000 Phaseolus vulgaris HOM05D000861 ORTHO05D001799 1.4e-08 62.8 37 73.0
VMungo0720G2833 Vigna mungo HOM05D000861 ORTHO05D001799 1.4e-08 62.8 37 70.3
arahy.Tifrunner.gnm1.ann1.LWV2XW Arachis hypogaea HOM05D000861 ORTHO05D001799 2.4e-08 62.0 50 62.0
Gohir.A09G131200 Gossypium hirsutum HOM05D000861 ORTHO05D001799 2.4e-08 62.0 50 62.0
PSO063G3798 Papaver somniferum HOM05D000861 ORTHO05D001799 2.4e-08 62.0 42 71.4
Prupe.7G086600 Prunus persica HOM05D000861 ORTHO05D001799 2.4e-08 62.0 58 51.7
arahy.Tifrunner.gnm1.ann1.S9NTH3 Arachis hypogaea HOM05D000861 ORTHO05D001799 3.2e-08 61.6 50 62.0
Medtr7g107380 Medicago truncatula HOM05D000861 ORTHO05D001799 4.1e-08 61.2 50 64.0
Glyma.02G167900 Glycine max HOM05D000861 ORTHO05D001799 5.4e-08 60.8 37 73.0
MD12G1049600 Malus domestica HOM05D000861 ORTHO05D001799 5.4e-08 60.8 49 65.3
Rhsim04G0091800 Rhododendron simsii HOM05D000861 ORTHO05D001799 5.4e-08 60.8 78 50.0
Cfa008013 Carpinus fangiana HOM05D000861 ORTHO05D001799 7.1e-08 60.5 50 62.0
CiPaw.04G006600 Carya illinoinensis HOM05D000861 ORTHO05D001799 9.2e-08 60.1 46 63.0
Haze_14046 Corylus avellana HOM05D000861 ORTHO05D001799 9.2e-08 60.1 50 62.0
Haze_14057 Corylus avellana HOM05D000861 ORTHO05D001799 9.2e-08 60.1 50 62.0
PSO017G3327 Papaver somniferum HOM05D000861 ORTHO05D001799 9.2e-08 60.1 42 69.0
arahy.Tifrunner.gnm1.ann1.P9EW5D Arachis hypogaea HOM05D000861 ORTHO05D001799 1.2e-07 59.7 79 44.3
Ciclev10012772m.g Citrus clementina HOM05D000861 ORTHO05D001799 1.2e-07 59.7 46 65.2
Ciclev10012779m.g Citrus clementina HOM05D000861 ORTHO05D001799 1.2e-07 59.7 46 65.2
Glyma.09G103400 Glycine max HOM05D000861 ORTHO05D001799 1.2e-07 59.7 43 62.8
Glyma.13G300300 Glycine max HOM05D000861 ORTHO05D001799 1.2e-07 59.7 37 64.9
Gohir.D09G127200 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.2e-07 59.7 53 64.2
Gohir.D09G127266 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.2e-07 59.7 53 64.2
Gohir.D09G127500 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.2e-07 59.7 53 64.2
Sed0027659 Sechium edule HOM05D000861 ORTHO05D001799 1.2e-07 59.7 50 58.0
Gohir.D01G123300 Gossypium hirsutum HOM05D000861 ORTHO05D001799 2.1e-07 58.9 49 63.3
Gorai.002G154300 Gossypium raimondii HOM05D000861 ORTHO05D001799 2.1e-07 58.9 49 63.3
Gorai.006G146000 Gossypium raimondii HOM05D000861 ORTHO05D001799 2.1e-07 58.9 50 60.0
PSO063G4353 Papaver somniferum HOM05D000861 ORTHO05D001799 2.7e-07 58.5 42 66.7
CANSAT35G0029 Cannabis sativa HOM05D000861 ORTHO05D001799 3.5e-07 58.2 32 78.1
CANSAT54G0372 Cannabis sativa HOM05D000861 ORTHO05D001799 3.5e-07 58.2 32 78.1
CANSAT54G0686 Cannabis sativa HOM05D000861 ORTHO05D001799 3.5e-07 58.2 32 78.1
Duzib093G1474 Durio zibethinus HOM05D000861 ORTHO05D001799 3.5e-07 58.2 32 81.2
QL02p055374 Quercus lobata HOM05D000861 ORTHO05D001799 3.5e-07 58.2 32 75.0
QL02p056435 Quercus lobata HOM05D000861 ORTHO05D001799 3.5e-07 58.2 32 75.0
TWI12G0319 Tripterygium wilfordii HOM05D000861 ORTHO05D001799 3.5e-07 58.2 51 58.8
PSO017G0564 Papaver somniferum HOM05D000861 ORTHO05D001799 4.6e-07 57.8 42 66.7
Prupe.7G086700 Prunus persica HOM05D000861 ORTHO05D001799 4.6e-07 57.8 38 65.8
TWI53G2126 Tripterygium wilfordii HOM05D000861 ORTHO05D001799 4.6e-07 57.8 52 57.7
TAR369G0660 Trochodendron aralioides HOM05D000861 ORTHO05D001799 4.6e-07 57.8 32 81.2
TAR623G0533 Trochodendron aralioides HOM05D000861 ORTHO05D001799 4.6e-07 57.8 32 81.2
Gohir.A01G136200 Gossypium hirsutum HOM05D000861 ORTHO05D001799 6.0e-07 57.4 52 61.5
MD14G1043500 Malus domestica HOM05D000861 ORTHO05D001799 6.0e-07 57.4 45 62.2
TWI56G0610 Tripterygium wilfordii HOM05D000861 ORTHO05D001799 6.0e-07 57.4 52 57.7
vmacro09130 Vaccinium macrocarpon HOM05D000861 ORTHO05D001799 6.0e-07 57.4 61 54.1
BcaB06g25558 Brassica carinata HOM05D000861 ORTHO05D007385 7.8e-07 57.0 55 52.7
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 7.8e-07 57.0 57 52.6
Cpa.g.sc85.10 Carica papaya HOM05D000861 ORTHO05D001799 7.8e-07 57.0 50 62.0
Manes.08G039000 Manihot esculenta HOM05D000861 ORTHO05D001799 7.8e-07 57.0 55 58.2
Prupe.1G502000 Prunus persica HOM05D000861 ORTHO05D001799 7.8e-07 57.0 42 64.3
CDE05G2688 Ceratophyllum demersum HOM05D000115 ORTHO05D001799 1.0e-06 56.6 57 56.1
MD12G1044700 Malus domestica HOM05D000861 ORTHO05D001799 1.0e-06 56.6 32 78.1
Nn7g35883 Nelumbo nucifera HOM05D000861 ORTHO05D001799 1.0e-06 56.6 32 78.1
RcHm_v2.0_Chr6g0295301 Rosa chinensis HOM05D000861 ORTHO05D001799 1.0e-06 56.6 32 75.0
Sed0012727 Sechium edule HOM05D000861 ORTHO05D001799 1.0e-06 56.6 50 60.0
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.3e-06 56.2 65 46.2
CiPaw.10G022500 Carya illinoinensis HOM05D000861 ORTHO05D001799 1.3e-06 56.2 50 54.0
Duzib106G0533 Durio zibethinus HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 75.0
Duzib128G1835 Durio zibethinus HOM05D000861 ORTHO05D001799 1.3e-06 56.2 44 61.4
Gohir.D01G110200 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gohir.D01G110300 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gohir.D04G093800 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gohir.D09G127300 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gohir.D09G127400 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gohir.D13G098100 Gossypium hirsutum HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gorai.005G034200 Gossypium raimondii HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Gorai.009G396400 Gossypium raimondii HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
MD12G1049500 Malus domestica HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 75.0
MD14G1048400 Malus domestica HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 75.0
RcHm_v2.0_Chr3g0477901 Rosa chinensis HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 78.1
Sed0025547 Sechium edule HOM05D000861 ORTHO05D001799 1.3e-06 56.2 50 54.0
Thecc.05G181200 Theobroma cacao HOM05D000861 ORTHO05D001799 1.3e-06 56.2 52 57.7
HPP92_021500 Vanilla planifolia HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 75.0
HPP92_021519 Vanilla planifolia HOM05D000861 ORTHO05D001799 1.3e-06 56.2 32 75.0
ATR0737G014 Amborella trichopoda HOM05D000861 ORTHO05D001799 1.7e-06 55.8 40 70.0
Cfa020107 Carpinus fangiana HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 71.9
CDE02G2121 Ceratophyllum demersum HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 78.1
CDE11G0084 Ceratophyllum demersum HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 78.1
FvH4_6g21310 Fragaria vesca HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 75.0
FAN02G1119 Fragaria x ananassa HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 75.0
FAN05G5045 Fragaria x ananassa HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 75.0
FAN09G2695 Fragaria x ananassa HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 75.0
FAN14G4283 Fragaria x ananassa HOM05D000861 ORTHO05D001799 1.7e-06 55.8 32 75.0
ATR1101G108 Amborella trichopoda HOM05D000861 ORTHO05D001799 2.3e-06 55.5 34 76.5
Cpa.g.sc103.75 Carica papaya HOM05D000861 ORTHO05D001799 2.3e-06 55.5 32 75.0
CiPaw.09G025500 Carya illinoinensis HOM05D000861 ORTHO05D001799 2.3e-06 55.5 32 71.9
Gohir.A04G056500 Gossypium hirsutum HOM05D000861 ORTHO05D001799 2.3e-06 55.5 53 58.5
AT2G37270 Arabidopsis thaliana HOM05D000861 ORTHO05D001799 3.0e-06 55.1 45 62.2
Lalb_Chr21g0316301 Lupinus albus HOM05D000861 ORTHO05D001799 3.0e-06 55.1 51 54.9
MD04G1033100 Malus domestica HOM05D000861 ORTHO05D001799 3.0e-06 55.1 53 52.8
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 3.9e-06 54.7 53 56.6
COL.COLO4_29445 Corchorus olitorius HOM05D000861 ORTHO05D001799 3.9e-06 54.7 50 54.0
CsaV3_1G015150 Cucumis sativus L. HOM05D000861 ORTHO05D000112 3.9e-06 54.7 67 44.8
FAN05G5183 Fragaria x ananassa HOM05D000861 ORTHO05D001799 3.9e-06 54.7 62 51.6
Atru.chr8.1234 Acer truncatum HOM05D000861 ORTHO05D001799 5.1e-06 54.3 50 54.0
Aa31LG3G5600 Aethionema arabicum HOM05D000861 ORTHO05D001799 5.1e-06 54.3 45 60.0
Aa31LG9G15760 Aethionema arabicum HOM05D000861 ORTHO05D001799 5.1e-06 54.3 45 62.2
Hma1.2p1_0647F.1_g195060 Hydrangea macrophylla HOM05D000861 ORTHO05D001799 5.1e-06 54.3 51 52.9
Carub.0004s1918 Capsella rubella HOM05D000861 ORTHO05D001799 6.6e-06 53.9 45 60.0
Thhalv10021528m.g Eutrema salsugineum HOM05D000861 ORTHO05D001799 6.6e-06 53.9 46 58.7
Manes.09G041000 Manihot esculenta HOM05D000861 ORTHO05D001799 6.6e-06 53.9 32 71.9
QL07p025820 Quercus lobata HOM05D000861 ORTHO05D001799 6.6e-06 53.9 61 45.9
Sed0026810 Sechium edule HOM05D000861 ORTHO05D001799 6.6e-06 53.9 32 71.9
TAR636G2652 Trochodendron aralioides HOM05D000861 ORTHO05D001799 6.6e-06 53.9 32 75.0
C04p10730 Brassica napus HOM05D000861 ORTHO05D001799 8.6e-06 53.5 43 60.5
BolC4t22667H Brassica oleracea HOM05D000861 ORTHO05D001799 8.6e-06 53.5 43 60.5
Carub.0003s1126 Capsella rubella HOM05D000861 ORTHO05D001799 8.6e-06 53.5 45 57.8
CARHR132320 Cardamine hirsuta HOM05D000861 ORTHO05D001799 8.6e-06 53.5 45 60.0
MELO3C020049.2 Cucumis melo HOM05D000861 ORTHO05D001799 8.6e-06 53.5 66 51.5
Eucgr.A02519 Eucalyptus grandis HOM05D000861 ORTHO05D001799 8.6e-06 53.5 50 56.0
SEGI_04708 Sequoiadendron giganteum HOM05D000861 ORTHO05D001799 8.6e-06 53.5 32 71.9
THA.LOC104799272 Tarenaya hassleriana HOM05D000861 ORTHO05D001799 8.6e-06 53.5 44 63.6
Zm00001eb285610 Zea mays HOM05D000861 ORTHO05D001799 8.6e-06 53.5 40 60.0


User provided reference genes

Program Settings