Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9077 Trifolium pratense HOM05D000169 ORTHO05D037375 2.9e-34 147.9 70 100.0
TPR.G9094 Trifolium pratense HOM05D000169 ORTHO05D000542 5.3e-28 127.1 62 93.5
Medtr5g027480 Medicago truncatula HOM05D000169 ORTHO05D000542 3.0e-23 111.3 62 83.9
Psat2g139640 Pisum sativum HOM05D000169 ORTHO05D037375 5.1e-23 110.5 61 83.6
TPR.G29418 Trifolium pratense HOM05D000169 ORTHO05D000542 5.1e-23 110.5 60 81.7
Ca_25150_v3 Cicer arietinum L. HOM05D000169 ORTHO05D000542 6.7e-23 110.2 62 82.3
Medtr5g027500 Medicago truncatula HOM05D000169 ORTHO05D000542 6.7e-23 110.2 66 77.3
Psat7g170480 Pisum sativum HOM05D000169 ORTHO05D000542 8.8e-23 109.8 62 79.0
Lj2g0008706 Lotus japonicus HOM05D000169 ORTHO05D000542 1.0e-18 96.3 62 71.0
VMungo1215G0115 Vigna mungo HOM05D000169 ORTHO05D000542 1.3e-18 95.9 61 70.5
Phvul.002G132900 Phaseolus vulgaris HOM05D000169 ORTHO05D000542 1.9e-17 92.0 61 68.9
arahy.Tifrunner.gnm1.ann1.C7I9DN Arachis hypogaea HOM05D000169 ORTHO05D000542 2.5e-17 91.7 66 63.6
arahy.Tifrunner.gnm1.ann1.RX4FVN Arachis hypogaea HOM05D000169 ORTHO05D000542 2.5e-17 91.7 66 63.6
Dinv06900 Davidia involucrata HOM05D000169 ORTHO05D000542 9.4e-17 89.7 58 72.4
Hma1.2p1_0803F.1_g220670 Hydrangea macrophylla HOM05D000169 ORTHO05D000542 9.4e-17 89.7 60 68.3
Lj7A125T32 Lonicera japonica HOM05D000169 ORTHO05D000542 1.2e-16 89.4 56 75.0
Sed0002429 Sechium edule HOM05D000169 ORTHO05D000542 1.6e-16 89.0 63 66.7
Duzib068G1254 Durio zibethinus HOM05D000169 ORTHO05D000542 2.1e-16 88.6 69 65.2
Glyma.01G010000 Glycine max HOM05D000169 ORTHO05D000542 2.7e-16 88.2 59 66.1
Sc05g0005340 Simmondsia chinensis HOM05D000169 ORTHO05D000542 3.6e-16 87.8 55 74.5
Gohir.D08G173400 Gossypium hirsutum HOM05D000169 ORTHO05D000542 8.0e-16 86.7 68 66.2
Gorai.004G180900 Gossypium raimondii HOM05D000169 ORTHO05D000542 8.0e-16 86.7 68 66.2
Hma1.2p1_1137F.1_g260670 Hydrangea macrophylla HOM05D000169 ORTHO05D000542 8.0e-16 86.7 60 66.7
MSTRG.25706 Avicennia marina HOM05D000169 ORTHO05D000542 1.0e-15 86.3 63 65.1
Gohir.A08G152400 Gossypium hirsutum HOM05D000169 ORTHO05D000542 1.0e-15 86.3 61 72.1
Gohir.D03G177532 Gossypium hirsutum HOM05D000169 ORTHO05D000542 1.0e-15 86.3 67 64.2
Gorai.003G186800 Gossypium raimondii HOM05D000169 ORTHO05D000542 1.0e-15 86.3 67 64.2
CiPaw.11G101200 Carya illinoinensis HOM05D000169 ORTHO05D000542 1.4e-15 85.9 58 67.2
Lalb_Chr09g0325321 Lupinus albus HOM05D000169 ORTHO05D000542 1.8e-15 85.5 58 67.2
Haze_08108 Corylus avellana HOM05D000169 ORTHO05D000542 3.0e-15 84.7 58 67.2
Dinv06899 Davidia involucrata HOM05D000169 ORTHO05D000542 3.0e-15 84.7 58 69.0
Cfa012553 Carpinus fangiana HOM05D000169 ORTHO05D000542 3.9e-15 84.3 58 67.2
Gohir.A03G000017 Gossypium hirsutum HOM05D000169 ORTHO05D000542 3.9e-15 84.3 67 62.7
Thecc.03G314100 Theobroma cacao HOM05D000169 ORTHO05D000542 3.9e-15 84.3 62 66.1
CANSAT21G0066 Cannabis sativa HOM05D000169 ORTHO05D000542 6.7e-15 83.6 59 67.8
HanXRQChr07g0202201 Helianthus annuus HOM05D000169 ORTHO05D000542 6.7e-15 83.6 57 66.7
RcHm_v2.0_Chr7g0212861 Rosa chinensis HOM05D000169 ORTHO05D000542 8.8e-15 83.2 58 69.0
ECA240G0966 Erigeron canadensis HOM05D000169 ORTHO05D000542 1.5e-14 82.4 57 61.4
HanXRQChr01g0000071 Helianthus annuus HOM05D000169 ORTHO05D000542 1.5e-14 82.4 57 64.9
Manes.17G006400 Manihot esculenta HOM05D000169 ORTHO05D000542 1.5e-14 82.4 59 67.8
COL.COLO4_16895 Corchorus olitorius HOM05D000169 ORTHO05D000542 2.0e-14 82.0 62 62.9
QL12p000370 Quercus lobata HOM05D000169 ORTHO05D000542 2.6e-14 81.6 58 67.2
Cc08_g03990 Coffea canephora HOM05D000169 ORTHO05D000542 3.3e-14 81.3 60 61.7
ClCG07G002280 Citrullus lanatus HOM05D000169 ORTHO05D000542 4.4e-14 80.9 66 57.6
HPP92_003309 Vanilla planifolia HOM05D000169 ORTHO05D000542 4.4e-14 80.9 60 60.0
FvH4_5g23550 Fragaria vesca HOM05D000169 ORTHO05D000542 5.7e-14 80.5 57 68.4
FAN18G0947 Fragaria x ananassa HOM05D000169 ORTHO05D000542 5.7e-14 80.5 57 68.4
FAN18G1529 Fragaria x ananassa HOM05D000169 ORTHO05D000542 5.7e-14 80.5 57 68.4
HanXRQChr01g0000061 Helianthus annuus HOM05D000169 ORTHO05D000542 5.7e-14 80.5 57 64.9
Rhsim07G0135800 Rhododendron simsii HOM05D000169 ORTHO05D000542 5.7e-14 80.5 64 59.4
HPP92_003337 Vanilla planifolia HOM05D000169 ORTHO05D037375 5.7e-14 80.5 60 60.0
Potri.003G099700 Populus trichocarpa HOM05D000169 ORTHO05D000542 7.4e-14 80.1 61 65.6
Sed0014318 Sechium edule HOM05D000169 ORTHO05D000542 9.7e-14 79.7 58 65.5
DCAR_008197 Daucus carota HOM05D000169 ORTHO05D000542 2.2e-13 78.6 59 59.3
FAN04G0621 Fragaria x ananassa HOM05D000169 ORTHO05D000542 2.2e-13 78.6 57 66.7
FAN08G3297 Fragaria x ananassa HOM05D000169 ORTHO05D000542 2.2e-13 78.6 57 66.7
FAN13G2859 Fragaria x ananassa HOM05D000169 ORTHO05D000542 2.8e-13 78.2 57 66.7
Nn1g01931 Nelumbo nucifera HOM05D000169 ORTHO05D000542 2.8e-13 78.2 56 67.9
MBI04_g36025_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D000542 6.3e-13 77.0 55 60.0
MBI04_g42032_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D000542 6.3e-13 77.0 55 60.0
Peaxi162Scf00408g00018 Petunia axillaris HOM05D000169 ORTHO05D000542 6.3e-13 77.0 57 64.9
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 6.3e-13 77.0 61 63.9
Atru.chr6.1564 Acer truncatum HOM05D000169 ORTHO05D000542 8.2e-13 76.6 59 61.0
CSS0036213 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D000542 8.2e-13 76.6 71 57.7
Nn6g34532 Nelumbo nucifera HOM05D000169 ORTHO05D000542 1.1e-12 76.3 58 63.8
TWI60G0407 Tripterygium wilfordii HOM05D000169 ORTHO05D000542 1.1e-12 76.3 57 66.7
GSVIVG01011541001 Vitis vinifera HOM05D000169 ORTHO05D000542 1.1e-12 76.3 58 58.6
Oeu006818.1 Olea europaea HOM05D000169 ORTHO05D000542 1.4e-12 75.9 65 53.8
RcHm_v2.0_Chr3g0478721 Rosa chinensis HOM05D000169 ORTHO05D000542 1.4e-12 75.9 59 61.0
vmacro14216 Vaccinium macrocarpon HOM05D000169 ORTHO05D000542 2.4e-12 75.1 64 57.8
PGSC0003DMG401009291 Solanum tuberosum HOM05D000169 ORTHO05D000542 3.1e-12 74.7 61 57.4
CAN.G773.15 Capsicum annuum HOM05D000169 ORTHO05D000542 4.1e-12 74.3 56 58.9
CsaV3_3G030410 Cucumis sativus L. HOM05D000169 ORTHO05D000542 5.3e-12 73.9 66 59.1
TAR657G0001 Trochodendron aralioides HOM05D000169 ORTHO05D000542 5.3e-12 73.9 56 60.7
Actinidia14764 Actinidia chinensis HOM05D000169 ORTHO05D000542 7.0e-12 73.6 58 62.1
Actinidia24586 Actinidia chinensis HOM05D000169 ORTHO05D000542 7.0e-12 73.6 58 62.1
HanXRQChr03g0082071 Helianthus annuus HOM05D000169 ORTHO05D000542 9.1e-12 73.2 60 58.3
Prupe.8G160600 Prunus persica HOM05D000169 ORTHO05D000542 9.1e-12 73.2 58 63.8
MELO3C022770.2 Cucumis melo HOM05D000169 ORTHO05D000542 1.2e-11 72.8 67 56.7
Lsat_1_v5_gn_6_73421 Lactuca sativa HOM05D000169 ORTHO05D000542 1.6e-11 72.4 55 60.0
ECA240G2014 Erigeron canadensis HOM05D000169 ORTHO05D000542 2.0e-11 72.0 60 56.7
SalBow1G8167 Salvia bowleyana HOM05D000169 ORTHO05D000542 2.0e-11 72.0 58 56.9
Sopen08g024910 Solanum pennellii HOM05D000169 ORTHO05D000542 2.0e-11 72.0 57 59.6
Aqoxy7G00880 Aquilegia oxysepala HOM05D000169 ORTHO05D000542 2.6e-11 71.6 55 61.8
ATR0829G054 Amborella trichopoda HOM05D000169 ORTHO05D000542 3.5e-11 71.2 56 57.1
Prupe.7G085200 Prunus persica HOM05D000169 ORTHO05D000542 3.5e-11 71.2 58 63.8
HanXRQChr13g0404791 Helianthus annuus HOM05D000169 ORTHO05D000542 4.5e-11 70.9 66 51.5
SGA_v2.0_scaffold96G29049 Striga asiatica HOM05D001165 ORTHO05D001347 4.5e-11 70.9 66 51.5
PSO675G3270 Papaver somniferum HOM05D000169 ORTHO05D000542 5.9e-11 70.5 59 57.6
Solyc08g076300.3 Solanum lycopersicum HOM05D000169 ORTHO05D000542 5.9e-11 70.5 61 55.7
MD14G1050700 Malus domestica HOM05D000169 ORTHO05D000542 7.7e-11 70.1 59 61.0
THA.LOC104798452 Tarenaya hassleriana HOM05D000169 ORTHO05D000542 1.3e-10 69.3 57 56.1
Hund14387 Selenicereus undatus HOM05D000169 ORTHO05D000542 2.2e-10 68.6 55 61.8
Nitab4.5_0000543g0100 Nicotiana tabacum HOM05D000169 ORTHO05D000542 2.9e-10 68.2 55 56.4
PGR031G0189 Punica granatum HOM05D000169 ORTHO05D000542 8.5e-10 66.6 58 50.0
AT4G19010 Arabidopsis thaliana HOM05D000169 ORTHO05D000542 9.4e-09 63.2 57 56.1
Aa31LG6G1720 Aethionema arabicum HOM05D000169 ORTHO05D000542 1.2e-08 62.8 57 54.4
Migut.A00583 Erythranthe guttata HOM05D000169 ORTHO05D000542 3.6e-08 61.2 59 55.9
AL7G35130 Arabidopsis lyrata HOM05D000169 ORTHO05D000542 6.1e-08 60.5 57 52.6
Ciclev10000735m.g Citrus clementina HOM05D000169 ORTHO05D000542 6.1e-08 60.5 65 50.8
Carub.0007s2214 Capsella rubella HOM05D000169 ORTHO05D000542 1.4e-07 59.3 57 52.6
CARHR225920 Cardamine hirsuta HOM05D000169 ORTHO05D000542 1.4e-07 59.3 57 50.9
Thhalv10024787m.g Eutrema salsugineum HOM05D000169 ORTHO05D000542 8.8e-07 56.6 61 49.2
Sp7g17740 Schrenkiella parvula HOM05D000169 ORTHO05D000542 8.8e-07 56.6 61 49.2
SEGI_34424 Sequoiadendron giganteum HOM05D000169 ORTHO05D000542 1.5e-06 55.8 55 47.3
COL.COLO4_21603 Corchorus olitorius HOM05D000169 ORTHO05D000542 2.0e-06 55.5 68 41.2
Ah.12g055670 Amaranthus hybridus HOM05D000169 ORTHO05D000542 3.3e-06 54.7 56 50.0
EL10Ac5g11983 Beta vulgaris HOM05D000169 ORTHO05D000542 7.5e-06 53.5 58 46.6


User provided reference genes

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