Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 7.3e-158 560.5 273 100.0
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 4.3e-118 428.3 258 81.0
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 3.7e-117 425.2 258 81.0
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 3.1e-116 422.2 258 80.2
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 5.0e-114 414.8 260 78.8
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 7.9e-112 407.5 259 77.6
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 3.0e-111 405.6 258 75.2
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 1.1e-110 403.7 248 77.8
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 1.3e-109 400.2 248 77.8
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 6.5e-106 387.9 259 74.1
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.1e-105 387.1 263 73.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.1e-104 382.9 265 70.6
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 1.4e-103 380.2 263 70.7
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 3.3e-102 375.6 261 68.2
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 4.4e-102 375.2 263 69.6
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.7e-101 373.2 259 69.9
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 4.8e-101 371.7 262 68.3
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 6.3e-101 371.3 259 69.5
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.1e-100 370.5 257 70.4
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.0e-99 366.3 262 66.4
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 2.0e-99 366.3 261 67.4
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 4.5e-99 365.2 268 66.8
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.0e-98 364.0 260 67.7
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.3e-98 363.6 251 69.7
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.7e-98 363.2 259 68.0
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.9e-98 362.5 250 68.8
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 8.5e-98 360.9 259 67.6
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.9e-97 359.8 259 67.6
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 4.2e-97 358.6 252 68.3
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 4.2e-97 358.6 266 65.0
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 5.5e-97 358.2 266 65.0
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 7.2e-97 357.8 252 67.5
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 1.2e-96 357.1 257 66.9
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 3.6e-96 355.5 257 66.9
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.7e-96 355.1 257 66.5
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 6.1e-96 354.8 258 65.1
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 8.0e-96 354.4 273 64.5
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 3.0e-95 352.4 266 65.0
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.2e-94 350.5 259 65.3
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.5e-94 347.8 247 66.0
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 9.7e-94 347.4 257 64.6
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 2.2e-93 346.3 260 64.2
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 4.8e-93 345.1 254 65.7
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 1.8e-92 343.2 256 65.6
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 3.1e-92 342.4 253 65.2
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 4.1e-92 342.0 264 63.3
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 4.1e-92 342.0 263 62.7
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 4.1e-92 342.0 260 64.2
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 9.1e-92 340.9 253 64.4
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 2.0e-91 339.7 248 66.1
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.0e-91 339.7 262 64.5
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 2.0e-91 339.7 263 62.7
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 2.7e-91 339.3 256 64.5
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 5.9e-91 338.2 259 63.7
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.3e-90 337.0 262 63.0
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 2.2e-90 336.3 259 63.3
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 6.5e-90 334.7 250 64.8
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 8.5e-90 334.3 258 62.8
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.9e-89 333.2 247 62.3
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 2.1e-88 329.7 258 62.4
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 2.1e-88 329.7 260 62.3
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 8.0e-88 327.8 250 64.4
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 8.0e-88 327.8 259 61.8
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 3.0e-87 325.9 253 62.8
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 5.2e-87 325.1 254 60.6
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 5.2e-87 325.1 246 63.4
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.0e-86 323.2 259 61.4
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 2.6e-86 322.8 260 61.5
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.3e-85 320.5 264 59.1
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.7e-85 320.1 255 61.6
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 2.2e-85 319.7 263 60.1
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.7e-85 318.9 262 59.9
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 6.3e-85 318.2 260 60.4
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.1e-84 317.4 245 62.4
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 5.4e-84 315.1 258 58.1
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 5.4e-84 315.1 249 59.4
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 5.4e-84 315.1 250 60.8
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 7.0e-84 314.7 251 59.4
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 7.7e-83 311.2 261 60.9
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.0e-82 310.8 247 63.2
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 1.7e-82 310.1 254 59.8
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 7.2e-81 304.7 223 65.0
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 9.5e-81 304.3 246 57.7
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 7.5e-78 294.7 260 55.4
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 5.0e-74 282.0 260 56.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 6.8e-71 271.6 266 54.5
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 8.3e-69 264.6 259 54.4
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.2e-68 262.7 199 62.8
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 8.6e-66 254.6 189 66.1
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 8.6e-66 254.6 189 66.1
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.3e-65 252.3 249 51.4
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 4.3e-65 252.3 203 59.6
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.8e-64 249.6 372 37.9
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 6.2e-64 248.4 195 60.5
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 8.9e-63 244.6 246 51.2
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.6e-62 243.0 262 50.8
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.7e-59 233.0 192 57.3
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 5.2e-55 218.8 187 61.5
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.3e-53 214.2 164 59.8
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.9e-53 213.0 250 47.2
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.6e-51 205.7 242 46.3
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-50 204.1 126 80.2
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 6.2e-48 195.3 124 68.5
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.1e-47 194.5 142 64.1
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 3.4e-46 189.5 159 58.5
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 2.4e-44 183.3 118 68.6
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 2.4e-44 183.3 118 68.6
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 2.4e-44 183.3 118 68.6
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.5e-43 179.5 107 76.6
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.3e-42 177.6 129 65.9
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.7e-42 177.2 125 70.4
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.0e-38 163.7 129 61.2
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 3.4e-38 162.9 144 60.4
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 1.1e-36 157.9 121 64.5
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.4e-31 141.0 120 58.3
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.4e-28 131.0 81 88.9
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.2e-21 107.1 101 54.5
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.2e-20 103.2 100 53.0
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.2e-20 103.2 100 53.0
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.2e-20 103.2 100 52.0
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.6e-19 100.9 124 46.8
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 2.1e-19 100.5 137 43.8
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.0e-15 85.1 85 51.8
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 1.7e-13 80.9 71 50.7
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 6.5e-13 79.0 63 66.7
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 8.4e-13 78.6 114 41.2
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 2.2e-08 63.9 65 49.2
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.8e-08 63.5 56 58.9
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 1.1e-07 61.6 65 47.7
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.5e-06 56.2 53 52.8


User provided reference genes

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