Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 0.0e+00 1227.2 598 100.0
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 0.0e+00 1078.2 632 85.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 7.6e-301 1036.6 605 85.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.7e-300 1035.4 522 95.0
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 2.2e-300 1035.0 596 84.9
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 3.5e-298 1027.7 618 82.5
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.9e-296 1021.9 593 84.3
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 6.9e-294 1013.4 530 91.3
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.2e-292 1008.4 575 85.4
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 5.0e-292 1007.3 530 90.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 5.1e-281 970.7 553 84.4
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 6.7e-281 970.3 531 86.1
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 8.8e-281 969.9 553 84.3
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 2.6e-280 968.4 531 85.9
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 7.4e-280 966.8 531 85.5
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.9e-276 954.9 531 85.1
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.9e-276 954.9 531 84.6
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 2.9e-276 954.9 529 85.3
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.8e-276 954.5 531 84.7
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 5.0e-276 954.1 531 85.3
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 6.5e-276 953.7 530 84.7
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 8.5e-276 953.4 530 84.9
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.1e-275 953.0 531 84.9
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.9e-275 952.2 531 84.9
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.9e-275 952.2 530 84.7
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 7.2e-275 950.3 531 84.2
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 9.4e-275 949.9 531 84.4
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.6e-274 949.1 531 84.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 2.1e-274 948.7 531 84.4
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 3.6e-274 948.0 531 83.2
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 4.7e-274 947.6 531 84.2
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.7e-274 947.6 531 84.2
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 6.1e-274 947.2 531 83.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 8.0e-274 946.8 631 74.3
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.4e-273 946.0 531 83.6
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.4e-273 946.0 531 84.0
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.0e-273 944.9 531 83.1
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.0e-273 944.9 531 83.8
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.0e-273 944.5 531 84.6
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 8.8e-273 943.3 531 83.4
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.0e-272 942.2 531 83.2
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.6e-272 941.8 531 83.4
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.4e-272 941.0 531 83.6
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 7.5e-272 940.3 531 82.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.3e-271 939.5 531 83.4
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 4.8e-271 937.6 531 83.4
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 6.3e-271 937.2 531 83.6
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.8e-270 935.6 531 83.1
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 3.1e-270 934.9 580 77.6
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 7.0e-270 933.7 531 82.9
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-269 932.9 531 82.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.0e-269 932.2 531 82.5
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 2.0e-269 932.2 540 81.9
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.5e-269 931.0 531 83.1
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 5.9e-269 930.6 531 82.7
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 7.7e-269 930.2 522 83.1
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-268 929.5 531 82.7
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.2e-268 928.7 532 82.3
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.9e-268 928.3 531 82.1
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 3.8e-268 927.9 528 82.6
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.5e-268 926.8 531 82.1
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.5e-267 925.2 555 78.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 5.5e-267 924.1 531 81.7
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.2e-267 923.7 531 81.9
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 9.4e-267 923.3 531 81.9
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.6e-266 922.5 531 81.7
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 3.6e-266 921.4 531 81.2
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 8.0e-266 920.2 523 82.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.3e-265 918.7 556 78.8
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 5.2e-265 917.5 522 82.8
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.8e-265 917.1 531 81.0
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 6.8e-265 917.1 531 81.4
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.5e-264 916.0 531 80.8
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 4.4e-264 914.4 531 80.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.4e-264 914.4 522 83.1
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 7.5e-264 913.7 531 81.2
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 9.8e-264 913.3 531 79.8
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.3e-263 912.9 531 80.6
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.7e-263 912.5 531 80.4
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.2e-263 912.1 531 80.6
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.8e-263 911.8 531 79.8
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.7e-263 911.4 531 80.2
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 4.8e-263 911.0 531 80.2
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.8e-263 911.0 531 81.5
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 6.3e-263 910.6 531 79.8
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 8.3e-263 910.2 531 80.8
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.1e-262 909.8 527 80.1
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.1e-262 909.8 531 80.4
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.4e-262 909.4 531 80.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.6e-261 906.0 532 80.5
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.7e-261 905.2 531 80.0
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 2.7e-261 905.2 532 80.5
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 3.5e-261 904.8 532 80.5
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 5.9e-261 904.0 532 80.5
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.7e-260 902.5 531 79.5
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.7e-260 902.5 531 79.3
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 6.5e-260 900.6 531 78.9
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.1e-259 899.8 531 79.5
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 5.5e-259 897.5 532 80.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 6.1e-258 894.0 531 79.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 4.4e-256 887.9 630 69.5
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.7e-256 887.5 533 77.1
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 4.9e-255 884.4 507 82.2
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 5.0e-252 874.4 534 78.1
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.9e-251 872.5 533 78.4
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.5e-251 872.1 533 78.4
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 3.6e-250 868.2 534 77.5
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 7.5e-248 860.5 531 76.8
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.3e-243 844.0 532 75.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.0e-241 840.1 524 76.5
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 9.8e-240 833.6 601 68.7
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 4.3e-235 818.1 531 75.3
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.8e-232 807.7 521 74.9
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.7e-228 796.2 448 83.5
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 2.8e-226 788.9 448 83.0
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 4.7e-226 788.1 535 69.5
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 4.7e-226 788.1 446 82.3
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 6.2e-226 787.7 537 71.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.2e-225 784.6 497 76.3
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.0e-224 782.7 439 84.5
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 4.7e-218 761.5 535 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 9.9e-216 753.8 534 67.4
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.4e-206 723.4 517 67.7
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.6e-192 674.5 452 72.6
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.9e-182 643.3 538 58.2
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-182 643.3 438 71.0
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 4.8e-170 602.1 361 77.8
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 5.5e-166 588.6 344 82.0
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 1.1e-150 537.7 280 90.7
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.8e-146 523.1 531 54.8
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-141 507.3 417 61.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 5.4e-137 492.3 278 82.4
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 7.0e-137 491.9 288 81.9
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 7.0e-137 491.9 548 48.2
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 3.8e-135 486.1 275 86.2
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 7.3e-126 455.3 499 51.7
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 6.2e-125 452.2 288 76.7
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.1e-108 398.3 564 41.8
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.5e-91 341.3 184 86.4
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 5.8e-91 339.3 188 85.1
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.3e-90 338.2 263 66.9
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 6.4e-90 335.9 630 35.1
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 1.8e-79 301.2 179 80.4
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.5e-78 298.1 569 36.4
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-78 297.7 179 78.8
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 4.3e-78 296.6 497 37.2
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 6.2e-77 292.7 167 81.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.2e-72 278.5 582 33.0
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.4e-68 265.0 197 70.6
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.9e-67 259.6 322 46.9
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 3.2e-65 253.8 603 33.2
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.2e-65 253.4 140 84.3
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.1e-60 238.8 602 31.1
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-50 204.9 117 82.1
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 3.8e-50 203.8 120 82.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 3.3e-46 190.7 100 89.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 1.8e-44 184.9 107 80.4
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.5e-41 174.5 155 58.7
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.6e-32 145.2 77 84.4
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.7e-29 135.2 137 51.8
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 4.1e-28 130.6 65 90.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 4.5e-27 127.1 67 85.1
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.6e-26 122.9 76 72.4
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 4.4e-22 110.5 63 77.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-17 95.1 63 68.3
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.6e-16 92.0 122 45.9
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 2.8e-16 91.3 51 80.4
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.3e-09 66.6 54 61.1
TPR.G31187 Trifolium pratense HOM05D004119 ORTHO05D412278 1.8e-07 62.0 37 83.8
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 8.9e-07 59.7 64 48.4


User provided reference genes

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