Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.4e-147 525.4 253 100.0
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.0e-97 360.5 254 70.5
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.2e-91 338.6 249 68.3
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-62 244.2 207 54.6
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.2e-57 225.3 240 50.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 9.5e-43 177.9 207 47.8
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 5.8e-40 168.7 230 42.2
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 9.8e-40 167.9 233 42.1
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 8.3e-39 164.9 205 42.4
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.4e-38 164.1 213 42.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.4e-38 164.1 213 42.3
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.4e-38 164.1 236 41.1
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.4e-38 163.3 257 38.1
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 3.2e-38 162.9 219 41.1
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.1e-38 162.5 209 42.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 7.0e-38 161.8 231 40.7
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 2.7e-37 159.8 224 44.2
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 4.6e-37 159.1 228 39.9
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.0e-36 157.9 252 40.1
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.3e-36 156.8 208 41.3
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.9e-36 156.0 215 43.3
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 8.6e-36 154.8 203 41.4
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-35 154.5 213 39.9
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-35 154.5 213 39.9
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.1e-35 154.5 256 35.9
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-35 154.1 197 39.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.9e-35 153.7 235 37.0
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.9e-35 153.7 221 41.2
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.9e-35 153.7 221 41.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.5e-35 153.3 197 38.6
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 3.3e-35 152.9 198 40.4
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 3.3e-35 152.9 206 39.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.3e-35 152.5 203 38.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.3e-35 152.5 197 39.1
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 7.3e-35 151.8 206 38.8
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 7.3e-35 151.8 210 41.4
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.3e-35 151.8 217 38.2
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 9.5e-35 151.4 235 36.6
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 9.5e-35 151.4 203 38.4
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.2e-34 151.0 204 37.3
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.2e-34 151.0 195 40.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.2e-34 151.0 210 39.5
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-34 150.6 229 38.0
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 2.1e-34 150.2 197 38.6
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.1e-34 150.2 223 37.7
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 2.1e-34 150.2 206 37.4
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.8e-34 149.8 231 37.2
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 4.7e-34 149.1 206 38.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 6.2e-34 148.7 214 42.1
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.4e-33 147.5 180 41.7
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.8e-33 147.1 197 37.6
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.8e-33 147.1 199 38.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.0e-33 146.0 197 37.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.0e-33 146.0 231 38.1
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 5.2e-33 145.6 197 37.1
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 5.2e-33 145.6 238 36.1
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 6.8e-33 145.2 214 38.8
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 6.8e-33 145.2 197 37.1
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 6.8e-33 145.2 184 40.2
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 8.9e-33 144.8 198 39.9
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 8.9e-33 144.8 205 37.1
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 8.9e-33 144.8 205 37.1
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 1.2e-32 144.4 197 37.6
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-32 144.4 197 36.5
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-32 144.1 197 36.5
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-32 144.1 197 36.5
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.5e-32 144.1 210 37.6
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 2.6e-32 143.3 197 37.6
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 2.6e-32 143.3 197 37.6
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 3.4e-32 142.9 196 37.2
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 3.4e-32 142.9 197 37.6
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 4.4e-32 142.5 197 37.1
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 4.4e-32 142.5 197 36.5
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.4e-32 142.5 202 36.1
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.8e-32 142.1 172 39.5
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.8e-32 142.1 197 36.5
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 7.5e-32 141.7 206 35.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 7.5e-32 141.7 176 40.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 9.8e-32 141.4 197 37.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 9.8e-32 141.4 226 33.6
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-31 141.0 197 37.1
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.9e-31 139.8 227 33.9
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.9e-31 139.0 206 38.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.4e-31 138.7 207 39.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 8.3e-31 138.3 207 34.3
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.1e-30 137.9 180 39.4
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.4e-30 137.5 195 34.4
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.4e-30 137.5 202 34.2
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.9e-30 137.1 239 34.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 2.4e-30 136.7 197 35.0
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 3.2e-30 136.3 205 37.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 7.0e-30 135.2 172 37.8
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.2e-29 134.4 206 35.9
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.6e-29 134.0 188 38.3
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.7e-29 133.3 218 33.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 7.8e-29 131.7 208 36.1
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.7e-28 130.6 170 40.0
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.3e-28 130.2 202 33.7
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.9e-28 129.4 179 34.6
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.0e-28 129.0 182 37.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.6e-28 128.6 179 34.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.1e-27 127.9 177 34.5
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.9e-27 127.1 177 37.9
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 3.3e-27 126.3 177 34.5
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.6e-26 124.0 199 34.7
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 3.6e-26 122.9 251 31.9
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.2e-26 122.1 227 32.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 8.1e-26 121.7 175 40.0
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 8.1e-26 121.7 162 38.3
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.1e-25 119.8 227 32.2
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.0e-25 119.4 199 34.2
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 5.2e-25 119.0 181 37.0
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 8.9e-25 118.2 191 35.1
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-24 117.9 239 31.8
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.2e-24 117.9 202 33.2
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.2e-24 117.9 203 32.5
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.4e-24 116.3 174 35.1
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 3.4e-24 116.3 210 34.3
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 5.8e-24 115.5 193 33.2
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 7.5e-24 115.2 182 35.2
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 7.5e-24 115.2 206 35.4
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.9e-23 113.2 255 31.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-23 113.2 148 39.2
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.9e-23 113.2 149 38.9
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.7e-23 112.8 234 31.2
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.4e-22 110.2 232 30.6
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.2e-22 109.8 156 34.6
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 3.2e-22 109.8 230 31.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 4.1e-22 109.4 148 38.5
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-22 109.0 147 38.1
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-22 109.0 147 38.8
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 9.2e-22 108.2 198 27.3
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.1e-21 107.1 200 28.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.5e-21 106.3 181 30.9
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.3e-20 104.4 146 40.4
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.9e-19 100.5 151 37.1
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 4.3e-19 99.4 176 29.5
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 5.6e-19 99.0 139 38.1
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.1e-18 97.1 230 29.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 6.2e-18 95.5 197 29.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 6.2e-18 95.5 139 38.8
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.4e-17 93.6 109 36.7
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 3.1e-17 93.2 145 31.7
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 3.1e-17 93.2 168 29.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 4.9e-15 85.9 169 30.2
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 6.4e-15 85.5 129 34.1
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 8.4e-15 85.1 108 38.0
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 7.1e-14 82.0 146 30.8
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.1e-11 74.7 88 40.9
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.3e-11 73.2 217 25.8
Lj1g0021452 Lotus japonicus HOM05D004214 ORTHO05D004963 4.7e-10 69.3 59 57.6
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 6.9e-09 65.5 197 25.9
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.9e-09 65.5 204 27.9
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 3.4e-08 63.2 180 23.3
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.4e-06 57.0 179 27.4


User provided reference genes

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