Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 2029.2 1032 100.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1849.3 1032 92.4
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1833.2 1032 91.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1776.9 1053 87.0
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1710.7 1025 85.5
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1699.9 1032 85.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1669.4 1035 83.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1668.3 1032 84.2
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1667.5 1034 83.6
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1665.6 1066 82.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1657.1 1034 82.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1655.6 1023 83.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1639.0 1025 82.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1633.2 1060 80.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1597.4 1026 81.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1529.2 1051 75.1
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1523.8 1042 75.2
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1515.4 1042 75.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1508.8 1035 75.7
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1508.8 1034 74.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1505.7 1037 75.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1505.0 1031 74.3
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1502.6 1033 75.0
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1501.9 1042 74.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1492.2 1042 74.6
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1491.9 1012 74.8
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1491.9 1034 75.2
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1489.9 1048 74.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1488.8 1012 74.7
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1488.4 1043 73.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1488.0 1042 74.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1487.6 1041 74.9
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1483.8 1048 74.1
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1476.1 1049 73.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1473.8 1034 74.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 1029 74.1
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1469.9 1035 73.2
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1469.5 1013 74.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1466.8 1042 73.3
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1463.0 1050 72.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1458.7 1013 74.2
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1452.2 1033 73.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1447.6 1037 73.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1444.9 1092 70.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1441.0 1042 72.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1439.9 1055 71.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1437.2 1043 71.3
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1433.3 985 75.5
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1428.3 1046 71.5
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 1029 73.2
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1423.7 1031 72.6
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1418.7 1023 73.2
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1417.5 1037 71.8
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1416.7 1038 71.8
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 992 72.9
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1044 72.2
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1412.9 1044 71.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1036 71.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1038 71.9
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1407.1 1038 71.8
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1399.4 1027 71.2
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1016 71.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1397.1 1036 71.0
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1397.1 1036 71.0
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1390.2 1033 70.8
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1382.9 1039 70.5
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1034 70.5
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1010 71.4
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1378.6 1033 70.6
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1017 71.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1375.5 1018 70.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 1017 71.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1371.7 1013 71.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1033 70.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1367.8 1005 70.0
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1365.5 1073 66.9
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1364.4 1003 70.6
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1038 69.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1036 68.2
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1357.8 1006 70.1
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1066 68.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1033 69.1
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1350.5 1019 69.9
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1041 68.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1034 68.8
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1027 69.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1027 69.8
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1345.5 1035 68.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1031 68.6
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1030 68.3
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1030 68.4
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1338.9 942 72.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1031 68.2
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1026 68.2
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1335.5 1034 67.3
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1333.9 1044 66.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 899 77.1
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1327.8 1038 67.6
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1323.5 1043 67.2
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1044 67.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1320.8 1043 67.0
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 898 75.7
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1312.7 1007 68.6
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 1039 67.0
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1301.2 1019 67.7
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 1041 65.9
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 934 73.3
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1281.5 1026 67.2
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1280.0 1035 66.5
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1278.5 998 68.0
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1276.9 1032 66.3
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1276.9 1042 64.8
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 1017 66.8
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1037 65.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1263.4 1034 65.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1256.9 1031 64.6
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1251.5 1051 64.1
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1216.8 1008 63.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1191.4 937 67.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1185.2 1040 62.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1178.3 1041 61.9
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1168.3 1036 62.9
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1162.1 1043 62.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1147.9 1019 61.6
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1132.1 1017 60.9
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1119.4 1048 59.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1111.3 856 67.6
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1095.9 1059 57.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 8.3e-303 1043.9 1049 57.8
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 5.0e-300 1034.6 1002 57.8
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.3e-291 1005.0 911 59.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.7e-277 959.1 813 65.4
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.7e-277 959.1 830 61.6
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.7e-269 932.6 999 53.8
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.4e-254 883.6 755 65.8
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 3.5e-253 879.0 730 67.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 3.2e-246 855.9 1010 48.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.3e-243 845.9 989 48.5
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.4e-243 844.7 986 48.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.5e-235 819.7 1000 47.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 4.6e-229 798.9 840 52.1
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 6.9e-225 785.0 826 53.9
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.1e-203 714.5 726 59.9
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.2e-199 700.3 919 45.0
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 9.7e-195 684.9 658 57.8
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-184 651.4 836 49.6
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.0e-171 607.4 639 55.4
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.1e-166 591.7 969 39.0
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 8.9e-156 555.4 674 50.0
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.4e-153 548.1 633 51.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.1e-145 519.2 640 48.8
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.2e-141 508.4 1129 33.3
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.4e-129 468.4 401 58.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.4e-116 424.5 643 43.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.9e-112 409.5 284 74.6
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.1e-111 406.8 546 46.0
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-100 372.5 244 78.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.6e-88 330.9 318 57.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.8e-84 318.5 274 65.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.7e-75 288.1 992 29.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.5e-65 255.8 310 50.3
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 5.0e-58 230.7 921 26.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.1e-57 229.6 214 55.1
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 9.8e-54 216.5 526 31.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.5e-46 190.3 178 53.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.2e-45 188.7 223 43.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.9e-41 175.6 177 53.7
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.8e-39 169.1 158 57.0
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.8e-38 164.1 147 55.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 3.4e-30 138.3 237 42.2
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.9e-29 134.4 131 52.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 6.2e-24 117.5 115 52.2
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.4e-23 116.3 79 63.3
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.4e-23 116.3 79 63.3
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 7.8e-19 100.5 64 81.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.0e-14 85.9 63 73.0
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.5e-14 84.7 60 76.7


User provided reference genes

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