Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.2e-51 205.3 100 100.0
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.2e-51 205.3 100 100.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 1.4e-50 202.6 100 98.0
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 9.5e-47 189.9 100 91.0
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.2e-43 178.7 100 83.0
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 2.9e-43 178.3 100 84.0
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 2.9e-43 178.3 100 81.0
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.7e-43 177.9 100 83.0
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 4.9e-43 177.6 100 81.0
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 4.9e-43 177.6 100 81.0
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 6.4e-43 177.2 100 83.0
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 8.3e-43 176.8 100 83.0
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.1e-42 176.4 100 84.0
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.4e-42 176.0 100 83.0
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 1.4e-42 176.0 100 80.0
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 3.2e-42 174.9 99 80.8
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 3.2e-42 174.9 100 84.0
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.2e-42 174.9 100 81.0
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 3.2e-42 174.9 100 82.0
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.2e-42 174.9 100 82.0
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 4.1e-42 174.5 100 81.0
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.1e-42 174.5 100 81.0
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 5.4e-42 174.1 100 80.0
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 5.4e-42 174.1 100 81.0
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 7.1e-42 173.7 100 81.0
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 7.1e-42 173.7 100 81.0
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 9.2e-42 173.3 100 81.0
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 9.2e-42 173.3 100 79.0
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 9.2e-42 173.3 100 81.0
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.2e-41 172.9 99 79.8
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.2e-41 172.9 100 81.0
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.6e-41 172.6 100 78.0
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.6e-41 172.6 100 79.0
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 2.1e-41 172.2 99 80.8
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 2.7e-41 171.8 100 79.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.7e-41 171.8 100 79.0
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 2.7e-41 171.8 100 81.0
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.7e-41 171.8 100 81.0
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.5e-41 171.4 100 81.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 4.6e-41 171.0 100 79.0
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 4.6e-41 171.0 100 79.0
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 4.6e-41 171.0 100 79.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 6.0e-41 170.6 100 79.0
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 7.8e-41 170.2 100 80.0
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 7.8e-41 170.2 100 77.0
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.3e-40 169.5 100 79.0
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.3e-40 169.5 100 78.0
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.7e-40 169.1 100 79.0
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.7e-40 169.1 100 79.0
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.7e-40 169.1 100 79.0
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 3.0e-40 168.3 100 77.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.0e-40 168.3 100 78.0
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.0e-40 168.3 100 78.0
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.0e-40 168.3 100 78.0
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 3.0e-40 168.3 100 78.0
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.0e-40 168.3 100 78.0
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 3.9e-40 167.9 100 78.0
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 5.1e-40 167.5 100 78.0
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 8.6e-40 166.8 99 77.8
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.1e-39 166.4 100 76.0
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.1e-39 166.4 100 77.0
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.5e-39 166.0 100 75.0
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.5e-39 166.0 100 76.0
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.5e-39 166.0 100 77.0
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.5e-39 166.0 100 78.0
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.9e-39 165.6 100 76.0
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 2.5e-39 165.2 100 75.0
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 2.5e-39 165.2 100 75.0
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 2.5e-39 165.2 100 75.0
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 3.3e-39 164.9 99 77.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 3.3e-39 164.9 100 75.0
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 5.6e-39 164.1 100 76.0
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 5.6e-39 164.1 100 76.0
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 7.3e-39 163.7 100 76.0
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 7.3e-39 163.7 100 74.0
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 7.3e-39 163.7 100 78.0
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 76.0
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 75.0
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 75.0
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 74.0
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 75.0
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 75.0
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 74.0
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 75.0
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 9.5e-39 163.3 100 75.0
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.2e-38 162.9 99 77.8
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 1.2e-38 162.9 100 75.0
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.6e-38 162.5 100 75.0
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.6e-38 162.5 100 75.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.6e-38 162.5 100 75.0
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 1.6e-38 162.5 100 76.0
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 1.6e-38 162.5 100 76.0
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.1e-38 162.2 100 74.0
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 2.1e-38 162.2 99 74.7
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 2.1e-38 162.2 99 72.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.1e-38 162.2 100 75.0
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.8e-38 161.8 100 74.0
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 2.8e-38 161.8 100 74.0
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.8e-38 161.8 100 74.0
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 2.8e-38 161.8 100 74.0
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.8e-38 161.8 100 74.0
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 2.8e-38 161.8 98 76.5
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 3.6e-38 161.4 100 75.0
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.6e-38 161.4 100 75.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 4.7e-38 161.0 100 75.0
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 6.2e-38 160.6 100 74.0
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 8.1e-38 160.2 99 76.8
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.1e-37 159.8 100 75.0
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.1e-37 159.8 100 73.0
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 1.1e-37 159.8 100 76.0
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.1e-37 159.8 99 76.8
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.4e-37 159.5 100 72.0
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.4e-37 159.5 100 74.0
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.8e-37 159.1 100 74.0
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.4e-37 158.7 100 72.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 3.1e-37 158.3 100 74.0
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.0e-37 157.9 100 73.0
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 5.2e-37 157.5 100 73.0
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 6.8e-37 157.1 97 73.2
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.2e-36 156.4 99 74.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.2e-36 156.4 97 75.3
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-36 156.0 100 71.0
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 1.5e-36 156.0 100 71.0
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.5e-36 156.0 92 77.2
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 1.5e-36 156.0 92 76.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.5e-36 156.0 99 71.7
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 2.0e-36 155.6 100 73.0
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.6e-36 155.2 100 71.0
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 2.6e-36 155.2 100 71.0
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.6e-36 155.2 100 71.0
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.6e-36 155.2 100 73.0
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 3.4e-36 154.8 100 71.0
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.4e-36 154.8 100 73.0
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 4.4e-36 154.5 95 72.6
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 5.8e-36 154.1 100 71.0
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 9.9e-36 153.3 92 76.1
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 9.9e-36 153.3 100 70.0
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.7e-35 152.5 100 72.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 4.9e-35 151.0 99 72.7
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 8.4e-35 150.2 100 69.0
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.2e-34 148.3 91 74.7
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 7.8e-33 143.7 99 66.7
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 2.3e-32 142.1 100 65.0
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.0e-32 141.7 86 75.6
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 5.1e-32 141.0 100 63.0
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.1e-31 139.8 99 66.7
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 4.4e-28 127.9 78 75.6
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 5.8e-28 127.5 77 77.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.7e-27 125.9 98 61.2
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 3.8e-27 124.8 98 56.1
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.1e-26 123.2 142 48.6
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.4e-26 122.9 70 78.6
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 1.9e-26 122.5 98 57.1
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-25 119.8 70 75.7
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.5e-25 118.2 100 52.0
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.3e-24 116.3 100 54.0
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.7e-24 115.9 98 53.1
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 9.6e-23 110.2 98 53.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-19 99.0 67 67.2
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 6.4e-19 97.4 98 50.0
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 6.4e-19 97.4 98 51.0
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.2e-18 95.1 67 65.7
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 6.0e-17 90.9 53 79.2
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 2.4e-13 79.0 44 81.8


User provided reference genes

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