Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 2.2e-205 718.8 378 100.0
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 3.6e-78 296.2 247 68.0
TPR.G7972 Trifolium pratense HOM05D013440 ORTHO05D013937 7.7e-57 225.3 124 92.7
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.1e-42 178.3 250 48.0
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 1.9e-39 167.5 276 48.2
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 2.8e-38 163.7 277 46.6
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 9.5e-31 138.7 169 50.9
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.1e-29 135.2 150 54.0
TPR.G24572 Trifolium pratense HOM05D013440 ORTHO05D013937 6.8e-29 132.5 112 70.5
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 3.4e-28 130.2 228 39.9
Medtr2g026970 Medicago truncatula HOM05D013440 ORTHO05D013937 1.9e-23 114.4 87 69.0
Medtr1g077860 Medicago truncatula HOM05D013440 ORTHO05D013937 1.5e-20 104.8 158 48.7
Medtr3g463980 Medicago truncatula HOM05D013440 ORTHO05D013937 4.9e-19 99.8 86 64.0
Medtr3g005890 Medicago truncatula HOM05D013440 ORTHO05D013937 1.2e-17 95.1 109 57.8
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 2.3e-16 90.9 152 40.1
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 2.3e-16 90.9 161 43.5
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 3.0e-16 90.5 56 64.3
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 3.0e-16 90.5 56 64.3
Psat0s1262g0280 Pisum sativum HOM05D010736 ORTHO05D010111 6.6e-16 89.4 228 34.6
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 8.7e-16 89.0 148 36.5
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 1.5e-15 88.2 196 33.7
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 3.1e-13 80.5 197 35.5
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 5.2e-13 79.7 226 29.2
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 5.2e-13 79.7 226 29.2
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 6.9e-13 79.3 142 35.2
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 5.8e-12 76.3 169 33.1
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 5.8e-12 76.3 169 33.1
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 7.6e-12 75.9 138 35.5
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 7.6e-12 75.9 67 49.3
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 1.7e-11 74.7 178 30.3
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 2.2e-11 74.3 97 40.2
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 2.9e-11 73.9 151 32.5
Glyma.01G074450 Glycine max HOM05D013440 ORTHO05D013937 1.1e-10 72.0 112 40.2
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 3.2e-10 70.5 150 30.7
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 3.2e-10 70.5 150 30.7
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 5.4e-10 69.7 60 46.7
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 5.4e-10 69.7 52 53.8
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.6e-09 68.2 55 50.9
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 3.5e-09 67.0 83 41.0
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 3.5e-09 67.0 150 32.0
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 4.6e-09 66.6 51 52.9
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 4.6e-09 66.6 79 46.8
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 4.6e-09 66.6 72 41.7
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 6.0e-09 66.2 62 45.2
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 6.0e-09 66.2 62 45.2
Cpa.g.sc20.205 Carica papaya HOM05D000174 ORTHO05D001526 6.0e-09 66.2 74 50.0
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 7.8e-09 65.9 79 44.3
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 7.8e-09 65.9 79 44.3
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 1.0e-08 65.5 62 43.5
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 1.0e-08 65.5 62 43.5
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 1.0e-08 65.5 60 45.0
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 1.3e-08 65.1 62 43.5
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 1.3e-08 65.1 62 43.5
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 1.3e-08 65.1 50 52.0
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 1.3e-08 65.1 50 52.0
HPP92_003504 Vanilla planifolia HOM05D000174 ORTHO05D001526 1.3e-08 65.1 58 51.7
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 1.7e-08 64.7 70 47.1
Lalb_Chr05g0211881 Lupinus albus HOM05D010736 ORTHO05D010111 1.7e-08 64.7 127 35.4
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 2.3e-08 64.3 50 52.0
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 3.0e-08 63.9 51 52.9
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 3.0e-08 63.9 88 36.4
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 3.0e-08 63.9 53 50.9
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 3.9e-08 63.5 57 50.9
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 6.6e-08 62.8 68 50.0
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 6.6e-08 62.8 78 46.2
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 1.1e-07 62.0 55 58.2
Dinv41879 Davidia involucrata HOM05D000174 ORTHO05D001526 1.5e-07 61.6 73 46.6
Gohir.D01G166100 Gossypium hirsutum HOM05D000174 ORTHO05D001526 1.5e-07 61.6 69 47.8
Gorai.002G206600 Gossypium raimondii HOM05D000174 ORTHO05D001526 1.5e-07 61.6 69 47.8
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 1.5e-07 61.6 71 43.7
Sopen06g020600 Solanum pennellii HOM05D000174 ORTHO05D001526 1.5e-07 61.6 93 43.0
AT4G35280 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 1.9e-07 61.2 58 56.9
PSO210G1674 Papaver somniferum HOM05D000174 ORTHO05D001526 1.9e-07 61.2 85 40.0
THA.LOC104819687 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 1.9e-07 61.2 66 50.0
Thecc.02G044700 Theobroma cacao HOM05D000174 ORTHO05D001526 1.9e-07 61.2 58 55.2
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 2.5e-07 60.8 125 33.6
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 2.5e-07 60.8 53 49.1
Solyc06g060480.1 Solanum lycopersicum HOM05D000174 ORTHO05D001526 2.5e-07 60.8 91 42.9
CARHR243600 Cardamine hirsuta HOM05D000174 ORTHO05D001526 3.3e-07 60.5 58 56.9
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 3.3e-07 60.5 64 50.0
Potri.009G166200 Populus trichocarpa HOM05D000174 ORTHO05D001526 3.3e-07 60.5 83 42.2
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 3.3e-07 60.5 42 59.5
Lj5P172T80 Lonicera japonica HOM05D000174 ORTHO05D001526 4.3e-07 60.1 55 54.5
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 5.6e-07 59.7 53 56.6
Duzib132G0848 Durio zibethinus HOM05D000174 ORTHO05D001526 5.6e-07 59.7 58 53.4
Duzib248G0614 Durio zibethinus HOM05D000174 ORTHO05D001526 5.6e-07 59.7 58 55.2
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 5.6e-07 59.7 74 48.6
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 5.6e-07 59.7 74 48.6
Potri.004G205300 Populus trichocarpa HOM05D000174 ORTHO05D001526 5.6e-07 59.7 60 51.7
Aa31LG2G14820 Aethionema arabicum HOM05D000174 ORTHO05D001526 7.3e-07 59.3 56 51.8
CAN.G62.50 Capsicum annuum HOM05D000174 ORTHO05D001526 7.3e-07 59.3 98 37.8
QL11p055621 Quercus lobata HOM05D000174 ORTHO05D001526 7.3e-07 59.3 65 49.2
QL11p055917 Quercus lobata HOM05D000174 ORTHO05D001526 7.3e-07 59.3 65 49.2
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 9.6e-07 58.9 59 54.2
COL.COLO4_17932 Corchorus olitorius HOM05D000174 ORTHO05D001526 9.6e-07 58.9 58 53.4
Duzib052G0399 Durio zibethinus HOM05D000174 ORTHO05D001526 9.6e-07 58.9 58 53.4
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 9.6e-07 58.9 74 39.2
Gorai.001G198600 Gossypium raimondii HOM05D019103 ORTHO05D010111 9.6e-07 58.9 73 41.1
Lsat_1_v5_gn_8_121041 Lactuca sativa HOM05D000174 ORTHO05D001526 9.6e-07 58.9 65 53.8
Medtr5g062110 Medicago truncatula HOM05D013440 ORTHO05D013937 9.6e-07 58.9 70 55.7
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.3e-06 58.5 130 32.3
A01p03280 Brassica napus HOM05D000174 ORTHO05D001526 1.3e-06 58.5 52 57.7
BraA01t00313Z Brassica rapa HOM05D000174 ORTHO05D001526 1.3e-06 58.5 52 57.7
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 1.3e-06 58.5 41 56.1
Gohir.A07G170878 Gossypium hirsutum HOM05D019103 ORTHO05D010111 1.6e-06 58.2 44 54.5
Gohir.D07G177633 Gossypium hirsutum HOM05D019103 ORTHO05D010111 1.6e-06 58.2 44 54.5
MD05G1134500 Malus domestica HOM05D000174 ORTHO05D001526 1.6e-06 58.2 84 42.9
MD10G1139600 Malus domestica HOM05D000174 ORTHO05D001526 1.6e-06 58.2 127 34.6
Medtr5g045335 Medicago truncatula HOM05D013440 ORTHO05D013937 1.6e-06 58.2 54 61.1
Rhsim11G0197100 Rhododendron simsii HOM05D000174 ORTHO05D001526 1.6e-06 58.2 61 55.7
PGSC0003DMG400038709 Solanum tuberosum HOM05D000174 ORTHO05D001526 1.6e-06 58.2 97 41.2
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 2.1e-06 57.8 66 43.9
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 2.1e-06 57.8 43 60.5
ECA246G3372 Erigeron canadensis HOM05D000174 ORTHO05D001526 2.1e-06 57.8 79 46.8
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 2.1e-06 57.8 65 50.8
Gohir.A01G175000 Gossypium hirsutum HOM05D000174 ORTHO05D001526 2.1e-06 57.8 69 46.4
HanXRQChr12g0374431 Helianthus annuus HOM05D000174 ORTHO05D001526 2.8e-06 57.4 51 56.9
Lalb_Chr22g0352391 Lupinus albus HOM05D000174 ORTHO05D001526 2.8e-06 57.4 46 54.3
Lalb_Chr22g0352401 Lupinus albus HOM05D000174 ORTHO05D001526 2.8e-06 57.4 46 54.3
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 2.8e-06 57.4 199 27.1
Sp7g33060 Schrenkiella parvula HOM05D000174 ORTHO05D001526 2.8e-06 57.4 58 55.2
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 2.8e-06 57.4 71 45.1
CANSAT56G2339 Cannabis sativa HOM05D000174 ORTHO05D001526 3.6e-06 57.0 70 47.1
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 3.6e-06 57.0 47 53.2
DCAR_015662 Daucus carota HOM05D000174 ORTHO05D001526 3.6e-06 57.0 169 30.8
Lsat_1_v5_gn_3_48800 Lactuca sativa HOM05D000174 ORTHO05D001526 3.6e-06 57.0 51 58.8
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 3.6e-06 57.0 71 40.8
BcaNung02386 Brassica carinata HOM05D000174 ORTHO05D001526 4.8e-06 56.6 63 47.6
C07p61070 Brassica napus HOM05D000174 ORTHO05D001526 4.8e-06 56.6 63 47.6
BolC7t46532H Brassica oleracea HOM05D000174 ORTHO05D001526 4.8e-06 56.6 63 47.6
Manes.08G058500 Manihot esculenta HOM05D000174 ORTHO05D001526 4.8e-06 56.6 66 48.5
CiPaw.05G091800 Carya illinoinensis HOM05D000174 ORTHO05D001526 6.2e-06 56.2 51 54.9
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 6.2e-06 56.2 46 58.7
HanXRQChr17g0543991 Helianthus annuus HOM05D000174 ORTHO05D001526 6.2e-06 56.2 43 62.8
PGR142G1089 Punica granatum HOM05D000174 ORTHO05D001526 6.2e-06 56.2 55 47.3
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 6.2e-06 56.2 45 60.0
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 6.2e-06 56.2 45 60.0
unitig_578.g16756 Utricularia gibba HOM05D000174 ORTHO05D001526 6.2e-06 56.2 91 40.7
EL10Ac9g21244 Beta vulgaris HOM05D000174 ORTHO05D001526 8.1e-06 55.8 55 52.7
Migut.N01353 Erythranthe guttata HOM05D000174 ORTHO05D001526 8.1e-06 55.8 49 59.2
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 8.1e-06 55.8 45 62.2
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 8.1e-06 55.8 45 62.2
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 8.1e-06 55.8 45 62.2
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 8.1e-06 55.8 158 28.5


User provided reference genes

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