Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7951 Trifolium pratense HOM05D019418 ORTHO05D000302 2.0e-94 349.4 218 100.0
Medtr2g078700 Medicago truncatula HOM05D000010 ORTHO05D000302 6.4e-72 274.6 222 72.1
Psat0s5198g0040 Pisum sativum HOM05D000010 ORTHO05D000302 3.4e-65 252.3 224 69.2
Psat0s2051g0040 Pisum sativum HOM05D000010 ORTHO05D000302 3.0e-61 239.2 223 73.1
Phvul.005G074500 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 3.0e-45 186.0 219 55.3
Lalb_Chr01g0006621 Lupinus albus HOM05D000010 ORTHO05D000302 5.1e-45 185.3 223 53.8
Lalb_Chr03g0030781 Lupinus albus HOM05D000010 ORTHO05D000302 1.1e-42 177.6 222 50.9
VMungo1080G1217 Vigna mungo HOM05D000010 ORTHO05D000302 1.8e-42 176.8 217 52.1
Lalb_Chr19g0134051 Lupinus albus HOM05D000010 ORTHO05D000302 2.5e-39 166.4 221 49.3
Glyma.12G226500 Glycine max HOM05D000010 ORTHO05D000302 7.2e-39 164.9 221 50.7
Lalb_Chr07g0182901 Lupinus albus HOM05D019418 ORTHO05D000302 3.6e-38 162.5 220 50.0
Glyma.13G274300 Glycine max HOM05D000010 ORTHO05D000302 6.3e-35 151.8 219 48.4
Haze_09408 Corylus avellana HOM05D000010 ORTHO05D000302 3.1e-34 149.4 222 48.6
Lj3g0022117 Lotus japonicus HOM05D000010 ORTHO05D000302 3.1e-34 149.4 225 45.8
CiPaw.12G117100 Carya illinoinensis HOM05D000010 ORTHO05D000302 1.5e-33 147.1 224 44.6
Phvul.011G160400 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 3.4e-33 146.0 222 45.5
CiPaw.11G167600 Carya illinoinensis HOM05D000010 ORTHO05D000302 2.9e-32 142.9 234 44.4
Lj3g0019574 Lotus japonicus HOM05D000010 ORTHO05D000302 7.2e-31 138.3 225 52.9
Medtr6g059440 Medicago truncatula HOM05D019418 ORTHO05D000302 6.1e-30 135.2 138 71.0
Thecc.07G097000 Theobroma cacao HOM05D000010 ORTHO05D000302 6.1e-30 135.2 225 49.3
VMungo1127G1061 Vigna mungo HOM05D000010 ORTHO05D000302 5.1e-29 132.1 220 45.0
Duzib268G1713 Durio zibethinus HOM05D000010 ORTHO05D000302 2.6e-28 129.8 226 49.1
QL08p023902 Quercus lobata HOM05D000010 ORTHO05D000302 6.3e-27 125.2 232 41.4
CsaV3_4G033430 Cucumis sativus L. HOM05D000010 ORTHO05D000302 8.2e-27 124.8 237 38.8
MELO3C025611.2 Cucumis melo HOM05D000010 ORTHO05D000302 1.1e-26 124.4 238 39.1
Duzib213G0879 Durio zibethinus HOM05D000010 ORTHO05D000302 1.4e-26 124.0 225 40.4
Prupe.4G175800 Prunus persica HOM05D000010 ORTHO05D000302 2.4e-26 123.2 236 41.5
MD11G1253500 Malus domestica HOM05D000010 ORTHO05D000302 6.9e-26 121.7 226 42.0
Sed0010922 Sechium edule HOM05D000010 ORTHO05D000302 9.1e-26 121.3 235 38.3
Sabra11G0101100 Salix brachista HOM05D000010 ORTHO05D000302 1.2e-25 120.9 225 44.9
Eucgr.F01170 Eucalyptus grandis HOM05D000010 ORTHO05D000302 3.4e-25 119.4 228 42.5
Dinv20205 Davidia involucrata HOM05D000010 ORTHO05D000302 4.5e-25 119.0 228 39.5
Hma1.2p1_1034F.1_g250400 Hydrangea macrophylla HOM05D000010 ORTHO05D000302 7.7e-25 118.2 222 40.5
Glyma.12G161700 Glycine max HOM05D000010 ORTHO05D000302 1.0e-24 117.9 230 41.7
Manes.15G089700 Manihot esculenta HOM05D000010 ORTHO05D000302 2.9e-24 116.3 222 39.6
Potri.011G115400 Populus trichocarpa HOM05D000010 ORTHO05D000302 2.9e-24 116.3 227 42.3
CSS0038547 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000302 3.8e-24 115.9 227 43.6
Gohir.A11G286000 Gossypium hirsutum HOM05D000010 ORTHO05D000302 8.5e-24 114.8 220 45.0
ClCG11G017790 Citrullus lanatus HOM05D000010 ORTHO05D000302 1.1e-23 114.4 243 36.6
COL.COLO4_18017 Corchorus olitorius HOM05D000010 ORTHO05D000302 1.4e-23 114.0 229 43.2
Manes.03G105700 Manihot esculenta HOM05D000010 ORTHO05D000302 2.5e-23 113.2 227 40.1
Gohir.D01G047700 Gossypium hirsutum HOM05D000010 ORTHO05D000302 3.2e-23 112.8 230 42.6
TWI38G1761 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 4.2e-23 112.5 233 37.3
Duzib170G0951 Durio zibethinus HOM05D000010 ORTHO05D000302 7.2e-23 111.7 221 44.3
Gorai.002G067300 Gossypium raimondii HOM05D000010 ORTHO05D000302 1.2e-22 110.9 230 42.2
Gohir.A01G061200 Gossypium hirsutum HOM05D000010 ORTHO05D000302 1.6e-22 110.5 230 42.6
Gorai.007G323900 Gossypium raimondii HOM05D000010 ORTHO05D000302 1.6e-22 110.5 222 43.7
Gohir.A13G147100 Gossypium hirsutum HOM05D000010 ORTHO05D000302 3.6e-22 109.4 228 37.7
Gohir.D13G152134 Gossypium hirsutum HOM05D000010 ORTHO05D000302 4.7e-22 109.0 228 37.3
Dinv14939 Davidia involucrata HOM05D000010 ORTHO05D000302 1.4e-21 107.5 183 43.7
Gorai.013G171300 Gossypium raimondii HOM05D000010 ORTHO05D000302 1.4e-21 107.5 228 36.8
Gohir.D11G298800 Gossypium hirsutum HOM05D000010 ORTHO05D000302 3.0e-21 106.3 222 43.2
DCAR_013122 Daucus carota HOM05D000010 ORTHO05D000302 2.6e-20 103.2 225 36.4
Cpa.g.sc131.88 Carica papaya HOM05D000010 ORTHO05D000302 5.7e-20 102.1 227 46.7
Rhsim06G0202800 Rhododendron simsii HOM05D000010 ORTHO05D000302 5.7e-20 102.1 228 37.7
arahy.Tifrunner.gnm1.ann1.XB6K25 Arachis hypogaea HOM05D000010 ORTHO05D000302 7.4e-20 101.7 101 62.4
Sed0010071 Sechium edule HOM05D000010 ORTHO05D000302 7.4e-20 101.7 228 36.8
Glyma.06G236000 Glycine max HOM05D000010 ORTHO05D000302 1.3e-19 100.9 235 39.1
vmacro23191 Vaccinium macrocarpon HOM05D000010 ORTHO05D000302 1.3e-19 100.9 228 39.9
arahy.Tifrunner.gnm1.ann1.B9XEKF Arachis hypogaea HOM05D000010 ORTHO05D000302 2.8e-19 99.8 101 61.4
TWI39G0113 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 4.8e-19 99.0 227 40.5
CANSAT35G0864 Cannabis sativa HOM05D000010 ORTHO05D000302 6.3e-19 98.6 249 34.5
TAR627G0697 Trochodendron aralioides HOM05D000010 ORTHO05D000302 2.4e-18 96.7 225 39.6
GSVIVG01014287001 Vitis vinifera HOM05D000010 ORTHO05D000302 5.3e-18 95.5 225 43.1
Cc05_g11720 Coffea canephora HOM05D000010 ORTHO05D000302 7.0e-18 95.1 232 37.9
Atru.chr2.2406 Acer truncatum HOM05D000010 ORTHO05D000302 1.6e-17 94.0 225 36.9
Nn1g04206 Nelumbo nucifera HOM05D000010 ORTHO05D000302 2.0e-17 93.6 223 40.8
Ciclev10008619m.g Citrus clementina HOM05D000010 ORTHO05D000302 2.6e-17 93.2 232 40.1
CAN.G162.35 Capsicum annuum HOM05D000010 ORTHO05D000302 1.0e-16 91.3 218 36.2
Lsat_1_v5_gn_5_127660 Lactuca sativa HOM05D000010 ORTHO05D000302 1.7e-16 90.5 225 34.2
Sopen07g031040 Solanum pennellii HOM05D000010 ORTHO05D000302 1.7e-16 90.5 227 34.8
Actinidia18776 Actinidia chinensis HOM05D000010 ORTHO05D000302 3.8e-16 89.4 232 36.6
Potri.001G396300 Populus trichocarpa HOM05D000010 ORTHO05D000302 3.8e-16 89.4 192 37.5
PGSC0003DMG400012403 Solanum tuberosum HOM05D000010 ORTHO05D000302 3.8e-16 89.4 228 33.8
Peaxi162Scf00069g01832 Petunia axillaris HOM05D000010 ORTHO05D000302 5.0e-16 89.0 230 35.7
Migut.M00779 Erythranthe guttata HOM05D000010 ORTHO05D000302 8.5e-16 88.2 225 34.2
Nitab4.5_0002019g0060 Nicotiana tabacum HOM05D000010 ORTHO05D000302 8.5e-16 88.2 217 35.9
Solyc07g062840.3 Solanum lycopersicum HOM05D000010 ORTHO05D000302 8.5e-16 88.2 227 34.4
Oeu051089.1 Olea europaea HOM05D000010 ORTHO05D000302 1.1e-15 87.8 228 33.8
Medtr4g097490 Medicago truncatula HOM05D019418 ORTHO05D261175 5.5e-15 85.5 131 45.8
RcHm_v2.0_Chr5g0032661 Rosa chinensis HOM05D000010 ORTHO05D000302 7.2e-15 85.1 237 33.3
TAR626G1367 Trochodendron aralioides HOM05D000010 ORTHO05D000302 1.2e-14 84.3 223 35.9
Aqoxy4G00690 Aquilegia oxysepala HOM05D000010 ORTHO05D000302 1.6e-14 84.0 227 33.9
Sc16g0007190 Simmondsia chinensis HOM05D000010 ORTHO05D000302 1.6e-14 84.0 235 32.3
THA.LOC104811874 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 1.6e-14 84.0 231 36.4
TAR629G0724 Trochodendron aralioides HOM05D000010 ORTHO05D000302 2.7e-14 83.2 220 35.5
Lalb_Chr20g0109531 Lupinus albus HOM05D000010 ORTHO05D000302 6.1e-14 82.0 219 37.9
AUR62019477 Chenopodium quinoa HOM05D000010 ORTHO05D000302 1.0e-13 81.3 256 34.4
TWI38G0587 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 1.4e-13 80.9 236 33.5
MBI07_g32659_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000302 1.8e-13 80.5 231 31.6
Medtr1g102520 Medicago truncatula HOM05D019418 ORTHO05D264912 1.8e-13 80.5 94 70.2
Medtr5g039560 Medicago truncatula HOM05D019418 ORTHO05D265926 1.8e-13 80.5 94 70.2
Nitab4.5_0002330g0090 Nicotiana tabacum HOM05D000010 ORTHO05D000302 1.8e-13 80.5 194 36.6
Hund22826 Selenicereus undatus HOM05D000010 ORTHO05D000302 1.2e-12 77.8 240 31.7
SalBow8G2195 Salvia bowleyana HOM05D000010 ORTHO05D000302 1.5e-12 77.4 221 32.6
ECA234G1102 Erigeron canadensis HOM05D000010 ORTHO05D000302 2.0e-12 77.0 179 36.3
Sc03g0010210 Simmondsia chinensis HOM05D000010 ORTHO05D000302 2.0e-12 77.0 236 32.2
Sabra16G0259500 Salix brachista HOM05D000010 ORTHO05D000302 2.6e-12 76.6 192 42.2
Lj1A838T32 Lonicera japonica HOM05D000010 ORTHO05D000302 3.3e-12 76.3 220 31.4
HanXRQChr03g0070611 Helianthus annuus HOM05D000010 ORTHO05D000302 5.7e-12 75.5 217 31.8
SGA_v2.0_scaffold73G24232 Striga asiatica HOM05D000010 ORTHO05D000302 5.7e-12 75.5 225 33.8
Nn1g06441 Nelumbo nucifera HOM05D000010 ORTHO05D000302 9.7e-12 74.7 213 38.0
Thhalv10013863m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 1.7e-11 73.9 237 32.1
Lsat_1_v5_gn_7_104460 Lactuca sativa HOM05D000010 ORTHO05D000302 1.7e-11 73.9 228 30.7
BcaC04g20401 Brassica carinata HOM05D000010 ORTHO05D000302 3.7e-11 72.8 235 31.9
BolC9t57283H Brassica oleracea HOM05D000010 ORTHO05D000302 3.7e-11 72.8 235 31.9
AT5G53950 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 4.8e-11 72.4 240 30.8
AL8G29092 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 1.8e-10 70.5 233 30.0
Lj1C839T8 Lonicera japonica HOM05D000010 ORTHO05D000302 2.4e-10 70.1 219 32.4
Atru.chr2.2405 Acer truncatum HOM05D000010 ORTHO05D000302 3.1e-10 69.7 129 41.9
C09p44000 Brassica napus HOM05D000010 ORTHO05D000302 4.1e-10 69.3 235 31.1
ECA236G2500 Erigeron canadensis HOM05D000010 ORTHO05D000302 7.0e-10 68.6 233 31.8
FAN21G2186 Fragaria x ananassa HOM05D000010 ORTHO05D000302 7.0e-10 68.6 237 29.5
vmacro09522 Vaccinium macrocarpon HOM05D000010 ORTHO05D000302 7.0e-10 68.6 234 30.8
BcaB08g35748 Brassica carinata HOM05D000010 ORTHO05D000302 1.6e-09 67.4 236 31.4
FvH4_3g19410 Fragaria vesca HOM05D000010 ORTHO05D000302 1.6e-09 67.4 227 30.8
BraA02t06130Z Brassica rapa HOM05D000010 ORTHO05D000302 2.0e-09 67.0 232 31.5
FAN11G0934 Fragaria x ananassa HOM05D000010 ORTHO05D000302 3.5e-09 66.2 227 30.4
A02p10670 Brassica napus HOM05D000010 ORTHO05D000302 5.9e-09 65.5 234 31.2
MBI06_g06469_MAGBIO Magnolia biondii HOM05D000658 ORTHO05D000826 5.9e-09 65.5 180 32.2
Sp6g16030 Schrenkiella parvula HOM05D000010 ORTHO05D000302 5.9e-09 65.5 233 31.3
BcaB05g22094 Brassica carinata HOM05D000010 ORTHO05D000302 1.0e-08 64.7 235 31.1
A10p11320 Brassica napus HOM05D000010 ORTHO05D000302 1.3e-08 64.3 235 31.1
BraA10t43223Z Brassica rapa HOM05D000010 ORTHO05D000302 1.3e-08 64.3 235 31.1
FAN25G2268 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.3e-08 64.3 226 29.6
C02p17800 Brassica napus HOM05D000010 ORTHO05D000302 1.7e-08 63.9 234 30.3
BcaC03g14365 Brassica carinata HOM05D000010 ORTHO05D000302 2.2e-08 63.5 234 29.9
CsaV3_3G019530 Cucumis sativus L. HOM05D000010 ORTHO05D000302 2.2e-08 63.5 75 53.3
Sed0027535 Sechium edule HOM05D000010 ORTHO05D000302 6.5e-08 62.0 204 32.4
ATR0730G026 Amborella trichopoda HOM05D000010 ORTHO05D000302 8.5e-08 61.6 229 31.0
SHI21701 Sapria himalayana HOM05D000010 ORTHO05D000302 8.5e-08 61.6 219 28.3
BolC2t07909H Brassica oleracea HOM05D000010 ORTHO05D000302 1.1e-07 61.2 234 30.3
MELO3C019401.2 Cucumis melo HOM05D000010 ORTHO05D000302 1.1e-07 61.2 209 31.6
FAN16G2019 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.1e-07 61.2 226 29.2
ClCG05G009250 Citrullus lanatus HOM05D000010 ORTHO05D000302 1.5e-07 60.8 81 53.1
EL10Ac4g08242 Beta vulgaris HOM05D000010 ORTHO05D000302 2.5e-07 60.1 251 33.9
unitig_0.g2042 Utricularia gibba HOM05D000010 ORTHO05D000302 7.2e-07 58.5 222 27.9
THA.LOC104825166 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 9.4e-07 58.2 227 44.5
FAN05G0894 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.2e-06 57.8 189 33.3
unitig_747.g21577 Utricularia gibba HOM05D000010 ORTHO05D000302 1.2e-06 57.8 225 28.4
AUR62036158 Chenopodium quinoa HOM05D000010 ORTHO05D000302 1.6e-06 57.4 93 46.2
Carub.0008s1426 Capsella rubella HOM05D000010 ORTHO05D000302 2.7e-06 56.6 239 33.5


User provided reference genes

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