Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7883 Trifolium pratense HOM05D001216 ORTHO05D005688 9.4e-147 523.5 259 100.0
Medtr7g108940 Medicago truncatula HOM05D001216 ORTHO05D005688 2.3e-132 475.7 260 90.4
Psat3g020360 Pisum sativum HOM05D001216 ORTHO05D005688 1.2e-128 463.4 260 88.5
Ca_09190_v3 Cicer arietinum L. HOM05D001216 ORTHO05D005688 1.5e-123 446.4 261 86.6
Lj1g0005208 Lotus japonicus HOM05D001216 ORTHO05D005688 1.0e-116 423.7 260 81.2
Glyma.03G216400 Glycine max HOM05D001216 ORTHO05D005688 5.0e-116 421.4 260 81.2
Glyma.19G212900 Glycine max HOM05D001216 ORTHO05D005688 1.1e-115 420.2 260 80.8
Phvul.001G209900 Phaseolus vulgaris HOM05D001216 ORTHO05D005688 8.0e-114 414.1 260 80.4
Lalb_Chr15g0078431 Lupinus albus HOM05D001216 ORTHO05D005688 5.2e-113 411.4 260 77.7
VMungo1383G0601 Vigna mungo HOM05D001216 ORTHO05D005688 1.5e-112 409.8 260 78.5
arahy.Tifrunner.gnm1.ann1.2L0PS7 Arachis hypogaea HOM05D001216 ORTHO05D005688 1.9e-110 402.9 260 75.8
Lalb_Chr18g0046881 Lupinus albus HOM05D001216 ORTHO05D005688 2.3e-105 386.0 255 75.7
Cfa005876 Carpinus fangiana HOM05D001216 ORTHO05D005688 4.0e-97 358.6 260 69.6
Atru.chr5.1093 Acer truncatum HOM05D001216 ORTHO05D005688 2.6e-96 355.9 260 69.2
Haze_04975 Corylus avellana HOM05D001216 ORTHO05D005688 2.6e-96 355.9 260 69.2
Dinv33073 Davidia involucrata HOM05D001216 ORTHO05D005688 2.9e-95 352.4 261 69.3
Dinv19670 Davidia involucrata HOM05D001216 ORTHO05D005688 4.9e-95 351.7 261 68.2
Gorai.004G051900 Gossypium raimondii HOM05D001216 ORTHO05D005688 1.1e-94 350.5 261 69.3
Gohir.D08G051800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 1.4e-94 350.1 261 69.3
Ciclev10018801m.g Citrus clementina HOM05D001216 ORTHO05D005688 2.1e-93 346.3 261 67.4
Hma1.2p1_0494F.1_g165430 Hydrangea macrophylla HOM05D001216 ORTHO05D005688 2.7e-93 345.9 261 67.4
CSS0031124 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 6.0e-93 344.7 261 67.4
Manes.01G222100 Manihot esculenta HOM05D001216 ORTHO05D005688 1.0e-92 344.0 262 67.2
QL12p027872 Quercus lobata HOM05D001216 ORTHO05D005688 1.9e-91 339.7 259 66.8
Potri.014G126700 Populus trichocarpa HOM05D001216 ORTHO05D005688 5.6e-91 338.2 261 66.7
Prupe.8G264600 Prunus persica HOM05D001216 ORTHO05D005688 1.2e-90 337.0 261 65.9
RcHm_v2.0_Chr6g0294391 Rosa chinensis HOM05D001216 ORTHO05D005688 8.1e-90 334.3 263 65.8
Cpa.g.sc151.24 Carica papaya HOM05D001216 ORTHO05D005688 1.4e-89 333.6 261 65.9
CiPaw.07G111800 Carya illinoinensis HOM05D001216 ORTHO05D005688 6.9e-89 331.3 259 65.6
PGR119G1482 Punica granatum HOM05D001216 ORTHO05D005688 6.9e-89 331.3 261 66.3
Eucgr.H01087 Eucalyptus grandis HOM05D001216 ORTHO05D005688 9.0e-89 330.9 257 65.0
MD03G1291500 Malus domestica HOM05D001216 ORTHO05D005688 1.2e-88 330.5 261 65.5
Sabra14G0094400 Salix brachista HOM05D001216 ORTHO05D005688 5.8e-88 328.2 261 65.1
FAN15G2312 Fragaria x ananassa HOM05D001216 ORTHO05D005688 2.9e-87 325.9 262 64.1
FAN27G1041 Fragaria x ananassa HOM05D001216 ORTHO05D005688 2.9e-87 325.9 262 64.1
FvH4_2g26030 Fragaria vesca HOM05D001216 ORTHO05D005688 6.4e-87 324.7 263 63.9
Nn3g21560 Nelumbo nucifera HOM05D001216 ORTHO05D005688 6.4e-87 324.7 261 63.6
DCAR_018318 Daucus carota HOM05D001216 ORTHO05D005688 1.9e-86 323.2 260 61.5
FAN24G0487 Fragaria x ananassa HOM05D001216 ORTHO05D005688 2.4e-86 322.8 262 63.7
Duzib138G0177 Durio zibethinus HOM05D001216 ORTHO05D005688 4.2e-86 322.0 253 66.4
Gorai.008G143400 Gossypium raimondii HOM05D001216 ORTHO05D005688 9.3e-86 320.9 261 64.8
Gohir.D12G132300 Gossypium hirsutum HOM05D001216 ORTHO05D005688 2.7e-85 319.3 261 64.8
Gohir.A12G128700 Gossypium hirsutum HOM05D001216 ORTHO05D005688 1.3e-84 317.0 260 63.8
MSTRG.17397 Avicennia marina HOM05D001216 ORTHO05D005688 8.7e-84 314.3 261 60.9
ClCG10G011110 Citrullus lanatus HOM05D001216 ORTHO05D005688 1.1e-83 313.9 260 62.3
HanXRQChr01g0000981 Helianthus annuus HOM05D001216 ORTHO05D005688 1.5e-83 313.5 261 60.5
MBI19_g30015_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D005688 5.6e-83 311.6 262 61.1
MD11G1306700 Malus domestica HOM05D001216 ORTHO05D005688 5.6e-83 311.6 259 64.9
SalBow2G0728 Salvia bowleyana HOM05D001216 ORTHO05D005688 5.6e-83 311.6 261 60.9
TWI14G0472 Tripterygium wilfordii HOM05D001216 ORTHO05D005688 2.8e-82 309.3 255 64.3
GSVIVG01028045001 Vitis vinifera HOM05D001216 ORTHO05D005688 8.1e-82 307.8 253 62.8
Aqoxy5G00793 Aquilegia oxysepala HOM05D001216 ORTHO05D005688 1.1e-81 307.4 261 58.2
CsaV3_4G000980 Cucumis sativus L. HOM05D001216 ORTHO05D005688 4.0e-81 305.4 262 60.3
MELO3C017941.2 Cucumis melo HOM05D001216 ORTHO05D005688 9.0e-81 304.3 262 60.7
Cc01_g21070 Coffea canephora HOM05D001216 ORTHO05D005688 1.5e-80 303.5 259 58.7
CSS0041875 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 2.0e-80 303.1 256 59.0
ECA248G1090 Erigeron canadensis HOM05D001216 ORTHO05D005688 3.4e-80 302.4 261 58.2
THA.LOC104801287 Tarenaya hassleriana HOM05D001216 ORTHO05D005688 5.8e-80 301.6 258 60.5
Lj1C22T13 Lonicera japonica HOM05D001216 ORTHO05D005688 7.6e-80 301.2 265 57.7
CAN.G862.66 Capsicum annuum HOM05D001216 ORTHO05D005688 1.3e-79 300.4 261 58.2
Sp6g02150 Schrenkiella parvula HOM05D001216 ORTHO05D005688 1.7e-79 300.1 261 59.8
Nitab4.5_0000116g0350 Nicotiana tabacum HOM05D001216 ORTHO05D005688 2.9e-79 299.3 261 59.0
BcaB05g23611 Brassica carinata HOM05D001216 ORTHO05D005688 3.8e-79 298.9 261 60.2
Peaxi162Scf00001g03514 Petunia axillaris HOM05D001216 ORTHO05D005688 4.9e-79 298.5 261 58.6
Solyc09g098580.3 Solanum lycopersicum HOM05D001216 ORTHO05D005688 4.9e-79 298.5 261 57.9
Carub.0006s3491 Capsella rubella HOM05D001216 ORTHO05D005688 6.4e-79 298.1 267 58.1
CARHR250470 Cardamine hirsuta HOM05D001216 ORTHO05D005688 6.4e-79 298.1 261 59.4
Sopen09g036490 Solanum pennellii HOM05D001216 ORTHO05D005688 6.4e-79 298.1 261 57.9
Migut.D00133 Erythranthe guttata HOM05D001216 ORTHO05D005688 8.4e-79 297.7 261 56.3
AL6G50870 Arabidopsis lyrata HOM05D001216 ORTHO05D005688 1.1e-78 297.4 261 58.6
AT4G02260 Arabidopsis thaliana HOM05D001216 ORTHO05D005688 1.1e-78 297.4 261 58.6
SGA_v2.0_scaffold198G41133 Striga asiatica HOM05D001216 ORTHO05D005688 1.1e-78 297.4 261 57.5
Thhalv10028413m.g Eutrema salsugineum HOM05D001216 ORTHO05D005688 3.2e-78 295.8 261 59.4
BcaC03g16112 Brassica carinata HOM05D001216 ORTHO05D005688 4.2e-78 295.4 261 59.0
BraA02t07450Z Brassica rapa HOM05D001216 ORTHO05D005688 5.4e-78 295.0 261 59.0
HanXRQChr15g0465121 Helianthus annuus HOM05D001216 ORTHO05D005688 5.4e-78 295.0 263 57.8
Sc05g0003610 Simmondsia chinensis HOM05D001216 ORTHO05D005688 5.4e-78 295.0 257 59.5
BolC2t09898H Brassica oleracea HOM05D001216 ORTHO05D005688 7.1e-78 294.7 261 59.0
vmacro15139 Vaccinium macrocarpon HOM05D001216 ORTHO05D005688 7.1e-78 294.7 262 59.2
ECA247G3137 Erigeron canadensis HOM05D001216 ORTHO05D005688 9.3e-78 294.3 261 56.7
Aa31LG5G1920 Aethionema arabicum HOM05D001216 ORTHO05D005688 1.2e-77 293.9 261 58.6
CDE09G0061 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 2.7e-77 292.7 259 57.1
A09p01720 Brassica napus HOM05D001216 ORTHO05D005688 3.5e-77 292.4 261 58.2
COL.COLO4_23312 Corchorus olitorius HOM05D001216 ORTHO05D005688 4.6e-77 292.0 226 66.8
PGSC0003DMG400031817 Solanum tuberosum HOM05D001216 ORTHO05D005688 6.0e-77 291.6 261 56.7
C09p01790 Brassica napus HOM05D001216 ORTHO05D005688 7.9e-77 291.2 261 59.0
BolC9t53114H Brassica oleracea HOM05D001216 ORTHO05D005688 1.3e-76 290.4 261 58.6
Actinidia25817 Actinidia chinensis HOM05D001216 ORTHO05D005688 1.8e-76 290.0 261 57.5
Solyc09g075390.4 Solanum lycopersicum HOM05D001216 ORTHO05D005688 1.8e-76 290.0 261 56.3
Sopen09g030160 Solanum pennellii HOM05D001216 ORTHO05D005688 1.8e-76 290.0 261 55.9
BraA09t35827Z Brassica rapa HOM05D001216 ORTHO05D005688 2.3e-76 289.7 261 59.0
PSO832G4554 Papaver somniferum HOM05D001216 ORTHO05D005688 3.9e-76 288.9 262 56.9
PSO210G0295 Papaver somniferum HOM05D001216 ORTHO05D005688 5.1e-76 288.5 262 57.3
BcaC04g24051 Brassica carinata HOM05D001216 ORTHO05D005688 1.5e-75 287.0 261 58.2
Duzib211G0167 Durio zibethinus HOM05D001216 ORTHO05D005688 4.8e-74 282.0 230 62.6
Ah.15g092990 Amaranthus hybridus HOM05D001216 ORTHO05D005688 4.0e-73 278.9 251 56.6
Nn4g25744 Nelumbo nucifera HOM05D001216 ORTHO05D005688 6.4e-71 271.6 261 55.2
Rhsim01G0287300 Rhododendron simsii HOM05D001216 ORTHO05D005688 5.5e-70 268.5 260 55.4
CDE02G3697 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 2.1e-69 266.5 240 56.7
Lsat_1_v5_gn_9_5980 Lactuca sativa HOM05D001216 ORTHO05D005688 2.3e-68 263.1 266 53.0
AUR62025529 Chenopodium quinoa HOM05D001216 ORTHO05D005688 5.1e-68 261.9 251 55.0
SalBow7G2795 Salvia bowleyana HOM05D001216 ORTHO05D005688 1.9e-67 260.0 228 59.2
Zm00001eb395000 Zea mays HOM05D001216 ORTHO05D005688 1.3e-66 257.3 259 53.7
AUR62008703 Chenopodium quinoa HOM05D001216 ORTHO05D005688 6.2e-66 255.0 262 53.8
A02p24590 Brassica napus HOM05D001216 ORTHO05D005688 1.3e-63 247.3 242 55.8
C02p38830 Brassica napus HOM05D001216 ORTHO05D005688 1.7e-63 246.9 242 55.8
Os03g0340900 Oryza sativa ssp. japonica HOM05D001216 ORTHO05D005688 2.2e-63 246.5 260 54.6
BcaB01g02061 Brassica carinata HOM05D001216 ORTHO05D005688 1.4e-62 243.8 226 58.4
ATR0693G436 Amborella trichopoda HOM05D001216 ORTHO05D005688 5.5e-62 241.9 262 50.0
Gohir.A08G041800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 3.7e-58 229.2 183 66.1
Actinidia21029 Actinidia chinensis HOM05D001216 ORTHO05D005688 2.6e-56 223.0 262 48.5
Hund05446 Selenicereus undatus HOM05D001216 ORTHO05D005688 3.4e-56 222.6 273 46.9
EL10Ac7g17565 Beta vulgaris HOM05D001216 ORTHO05D005688 7.2e-54 214.9 250 48.8
PGSC0003DMG402006673 Solanum tuberosum HOM05D001216 ORTHO05D005688 4.3e-51 205.7 200 54.0
Nitab4.5_0001859g0010 Nicotiana tabacum HOM05D001216 ORTHO05D005688 5.7e-51 205.3 183 57.9
Nitab4.5_0005673g0020 Nicotiana tabacum HOM05D001216 ORTHO05D005688 3.7e-50 202.6 181 57.5
HPP92_001317 Vanilla planifolia HOM05D001216 ORTHO05D005688 3.8e-47 192.6 260 43.1
Zm00001eb016330 Zea mays HOM05D001216 ORTHO05D005688 2.5e-46 189.9 207 49.8
SEGI_16893 Sequoiadendron giganteum HOM05D001216 ORTHO05D005688 3.2e-46 189.5 246 45.5
Oeu008344.1 Olea europaea HOM05D001216 ORTHO05D005688 1.3e-39 167.5 230 42.6
Mapoly0053s0023 Marchantia polymorpha HOM05D001216 ORTHO05D005688 3.8e-39 166.0 270 36.7
SMO119G0141 Selaginella moellendorffii HOM05D001216 ORTHO05D005688 3.9e-36 156.0 257 36.6
arahy.Tifrunner.gnm1.ann1.3SBY8X Arachis hypogaea HOM05D001216 ORTHO05D005688 8.8e-36 154.8 118 66.1
Pp3c6_15190 Physcomitrium patens HOM05D001216 ORTHO05D005688 5.7e-35 152.1 301 33.6
AagrBONN_evm.TU.Sc2ySwM_117.2305 Anthoceros agrestis HOM05D001216 ORTHO05D005688 5.3e-33 145.6 274 39.4
Gorai.004G051700 Gossypium raimondii HOM05D001216 ORTHO05D005688 2.8e-26 123.2 125 54.4
Gohir.D08G051750 Gossypium hirsutum HOM05D001216 ORTHO05D005688 3.7e-26 122.9 115 58.3
Pp3c16_7020 Physcomitrium patens HOM05D001216 ORTHO05D005688 5.5e-22 109.0 208 36.1
AagrBONN_evm.TU.Sc2ySwM_117.2330 Anthoceros agrestis HOM05D001216 ORTHO05D005688 5.2e-20 102.4 240 36.2
MBI19_g30016_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D005688 1.9e-14 84.0 113 41.6
Thecc.01G304700 Theobroma cacao HOM05D001216 ORTHO05D005688 5.0e-07 59.3 30 96.7
TAR362G1019 Trochodendron aralioides HOM05D001216 ORTHO05D005688 2.5e-06 57.0 30 90.0


User provided reference genes

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