Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 4.7e-67 257.7 125 100.0
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.5e-65 252.7 125 98.4
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 6.1e-51 204.1 114 86.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.3e-48 196.4 114 83.3
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 9.1e-47 190.3 120 73.3
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 4.5e-46 188.0 121 71.9
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.2e-45 185.7 120 70.8
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 7.5e-41 170.6 114 70.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 7.0e-39 164.1 119 64.7
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.6e-38 162.9 122 66.4
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 3.5e-38 161.8 119 63.9
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 3.5e-38 161.8 120 63.3
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.0e-37 160.2 114 64.9
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.9e-37 158.7 113 63.7
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.1e-36 156.8 113 63.7
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 3.6e-35 151.8 114 60.5
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.1e-35 151.0 114 59.6
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 6.1e-35 151.0 114 59.6
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 3.0e-34 148.7 114 58.8
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.8e-34 147.5 114 58.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.8e-34 147.5 114 58.8
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 2.6e-33 145.6 114 57.9
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 2.6e-33 145.6 114 57.0
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 3.4e-33 145.2 114 57.9
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 5.7e-33 144.4 113 60.2
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.5e-33 144.1 113 55.8
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 9.8e-33 143.7 114 57.9
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.3e-32 143.3 113 59.3
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.3e-32 143.3 113 59.3
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.7e-32 142.9 114 56.1
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.7e-32 142.9 113 54.9
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.7e-32 142.9 114 57.0
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 2.2e-32 142.5 118 56.8
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.2e-32 142.5 113 54.9
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.8e-32 142.1 114 55.3
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 3.7e-32 141.7 113 57.5
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.1e-31 140.2 114 54.4
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.4e-31 139.8 113 53.1
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 1.4e-31 139.8 114 56.1
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.8e-31 139.4 113 56.6
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.1e-31 138.7 114 54.4
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.1e-31 138.7 115 53.9
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.1e-31 138.7 114 55.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.1e-31 138.3 113 54.9
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 5.4e-31 137.9 114 56.1
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 5.4e-31 137.9 113 59.3
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 9.2e-31 137.1 113 54.9
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.2e-30 136.7 114 55.3
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 1.6e-30 136.3 114 58.8
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 2.0e-30 136.0 110 55.5
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.5e-30 134.8 111 56.8
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 5.9e-30 134.4 115 52.2
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.9e-30 134.4 112 54.5
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 7.8e-30 134.0 114 51.8
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 7.8e-30 134.0 113 54.0
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 2.9e-29 132.1 114 54.4
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 5.0e-29 131.3 114 52.6
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.9e-28 129.4 114 54.4
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.5e-28 129.0 107 54.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 9.5e-28 127.1 113 54.0
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.8e-27 125.6 105 57.1
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.8e-27 125.6 105 57.1
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.8e-27 125.6 105 57.1
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 4.7e-27 124.8 109 54.1
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.0e-26 123.6 120 50.0
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-26 122.9 111 51.4
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.3e-26 122.5 117 54.7
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.3e-26 122.5 114 50.9
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.3e-26 122.5 115 52.2
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.0e-26 121.7 116 50.9
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 4.0e-26 121.7 114 51.8
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.2e-26 121.3 126 48.4
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 5.2e-26 121.3 114 49.1
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.8e-26 120.9 115 52.2
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 8.9e-26 120.6 114 52.6
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-25 120.2 110 52.7
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.2e-25 120.2 106 50.9
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.5e-25 119.8 120 48.3
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-25 119.8 122 51.6
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.4e-25 118.6 112 51.8
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.4e-25 118.2 110 51.8
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.4e-25 118.2 90 57.8
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.3e-24 116.7 96 59.4
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-24 116.7 129 46.5
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.2e-24 115.9 117 47.9
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.9e-24 115.5 123 50.4
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-24 115.5 114 54.4
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 3.7e-24 115.2 114 53.5
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.7e-24 115.2 117 49.6
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 6.4e-24 114.4 113 50.4
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 8.3e-24 114.0 114 53.5
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.1e-23 113.6 114 43.9
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.1e-23 113.6 117 48.7
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 1.4e-23 113.2 113 52.2
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.9e-23 112.8 116 50.9
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.4e-23 112.5 114 53.5
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 2.4e-23 112.5 114 49.1
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.1e-23 111.7 125 47.2
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.1e-23 111.7 113 50.4
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 5.4e-23 111.3 113 46.0
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 5.4e-23 111.3 113 46.0
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 9.2e-23 110.5 115 50.4
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.2e-22 110.2 114 50.9
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 6.0e-22 107.8 112 51.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-20 103.2 123 46.3
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.5e-20 103.2 123 46.3
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.9e-20 102.8 119 47.1
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.9e-20 102.8 127 49.6
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.6e-20 101.3 116 44.0
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.6e-20 101.3 116 44.0
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 5.6e-20 101.3 123 44.7
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.6e-20 101.3 123 44.7
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 9.5e-20 100.5 123 43.9
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-19 100.1 125 47.2
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 2.1e-19 99.4 121 47.1
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.8e-19 99.0 121 45.5
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.8e-19 99.0 125 46.4
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 6.8e-18 94.4 94 43.6
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.2e-17 93.6 127 44.1
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 2.0e-17 92.8 106 43.4
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 2.6e-17 92.4 113 43.4
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 4.4e-17 91.7 115 47.0
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.5e-17 90.9 78 56.4
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 7.5e-17 90.9 102 42.2
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 9.8e-17 90.5 114 42.1
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.3e-16 90.1 113 42.5
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.7e-16 89.7 114 41.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.2e-16 89.4 110 42.7
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 2.9e-16 89.0 110 41.8
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.9e-16 89.0 103 41.7
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 2.9e-16 89.0 111 43.2
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.7e-16 88.6 110 42.7
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 4.9e-16 88.2 80 50.0
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.4e-16 87.8 106 43.4
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 8.3e-16 87.4 114 39.5
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.3e-16 87.4 110 43.6
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.3e-16 87.4 110 42.7
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 1.1e-15 87.0 110 41.8
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.9e-15 86.3 114 45.6
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.4e-15 85.9 54 75.9
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 3.2e-15 85.5 110 39.1
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 3.2e-15 85.5 111 37.8
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 4.1e-15 85.1 111 37.8
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 4.1e-15 85.1 111 37.8
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.0e-15 84.3 123 39.0
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 9.2e-15 84.0 110 37.3
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-14 83.6 102 40.2
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.5e-14 82.0 126 37.3
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.9e-12 76.3 64 51.6
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.5e-12 75.9 61 55.7
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.5e-12 75.9 74 47.3
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 4.7e-11 71.6 93 40.9
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.4e-10 70.1 117 32.5
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 4.4e-09 65.1 62 54.8
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.7e-08 63.2 105 28.6
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.1e-07 58.5 57 47.4


User provided reference genes

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