Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 2.3e-284 981.5 474 100.0
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 2.4e-257 891.7 474 90.5
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 2.7e-248 861.7 474 87.6
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.3e-247 859.4 472 87.9
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 2.0e-240 835.5 479 84.6
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.4e-236 822.8 476 82.6
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 2.9e-234 815.1 475 82.5
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.0e-231 806.6 474 82.9
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.7e-231 805.8 479 80.4
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 3.6e-229 798.1 463 83.6
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.5e-227 792.7 476 80.3
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.4e-227 791.2 477 79.9
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 2.4e-225 785.4 472 80.1
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 4.7e-221 771.2 482 77.6
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 8.9e-220 766.9 481 77.5
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 5.8e-219 764.2 468 79.5
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 1.3e-215 753.1 473 77.0
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 4.0e-204 714.9 483 71.0
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 4.0e-204 714.9 483 71.6
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 8.4e-202 707.2 482 69.9
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.6e-200 703.0 466 70.8
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.0e-199 700.3 476 71.0
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.9e-198 696.0 415 76.6
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 3.3e-198 695.3 477 69.0
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 2.8e-197 692.2 481 69.0
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 2.8e-197 692.2 397 79.3
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 4.8e-197 691.4 482 69.3
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.4e-196 689.9 487 69.0
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.4e-196 689.9 481 69.9
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 3.1e-196 688.7 473 70.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 3.1e-196 688.7 481 69.6
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 5.3e-196 688.0 481 69.0
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 5.3e-196 688.0 481 69.4
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 9.0e-196 687.2 473 68.5
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 1.5e-195 686.4 488 68.4
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 1.5e-195 686.4 475 68.6
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 4.5e-195 684.9 399 77.9
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.3e-194 683.3 398 77.1
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 2.9e-194 682.2 483 67.7
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 8.4e-194 680.6 471 68.4
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 4.2e-193 678.3 486 68.5
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 4.2e-193 678.3 473 70.0
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 4.2e-193 678.3 472 68.9
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 2.7e-192 675.6 463 69.3
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.0e-191 673.7 476 67.0
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.1e-191 671.4 497 66.6
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 8.7e-191 670.6 435 70.8
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 8.7e-191 670.6 405 75.6
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.9e-190 669.5 414 72.9
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.9e-190 669.5 435 70.8
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 5.7e-190 667.9 435 70.6
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 2.1e-189 666.0 435 71.3
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.8e-189 665.6 435 71.3
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 4.8e-189 664.8 476 67.9
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.4e-188 663.3 477 67.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 5.3e-188 661.4 468 68.6
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 6.9e-188 661.0 469 66.3
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.0e-187 659.4 467 66.0
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 6.5e-186 654.4 458 68.6
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 2.7e-184 649.0 468 66.2
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.6e-184 648.7 466 66.3
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 4.8e-181 638.3 409 72.1
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.1e-180 635.6 406 72.2
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.2e-179 633.6 443 67.9
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.2e-179 633.6 433 68.6
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.5e-179 633.3 416 70.7
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.6e-179 632.5 404 70.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 5.9e-179 631.3 454 67.6
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.0e-178 630.6 443 66.1
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.7e-178 629.8 417 71.5
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 5.0e-178 628.2 418 71.3
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.5e-177 625.9 430 67.0
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 3.2e-177 625.5 456 67.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 3.2e-177 625.5 456 67.3
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 7.2e-177 624.4 418 70.8
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.2e-176 623.6 416 71.2
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 3.6e-176 622.1 416 66.3
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 1.0e-175 620.5 465 65.8
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.8e-175 619.8 396 70.2
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 3.9e-175 618.6 418 70.3
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.7e-175 617.8 404 69.6
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.3e-174 615.5 393 73.0
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 3.3e-174 615.5 403 69.5
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 7.4e-174 614.4 475 63.8
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.7e-173 613.2 452 66.6
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.4e-172 610.1 385 69.6
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 5.3e-172 608.2 419 66.3
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.5e-171 605.1 400 66.5
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 4.2e-169 598.6 428 68.9
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 9.4e-169 597.4 432 64.4
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 3.6e-168 595.5 434 66.6
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.0e-167 594.0 349 76.2
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.4e-167 593.6 415 67.5
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 6.3e-165 584.7 353 75.9
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.1e-164 583.9 413 62.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 9.1e-164 580.9 409 65.5
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.5e-162 574.7 406 63.5
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 4.7e-160 568.5 356 72.5
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 1.0e-159 567.4 424 62.5
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 5.3e-156 555.1 327 77.7
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 1.2e-155 553.9 399 66.9
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 6.8e-151 538.1 328 75.0
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 4.4e-150 535.4 353 65.7
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 2.3e-146 523.1 393 61.6
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 2.8e-141 506.1 339 69.9
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 5.2e-127 458.8 434 55.1
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 4.4e-126 455.7 404 52.7
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 7.0e-124 448.4 440 48.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 8.6e-122 441.4 410 50.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.4e-119 434.1 320 68.4
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 5.2e-119 432.2 405 51.1
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.7e-114 417.2 258 75.2
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.3e-113 412.9 435 46.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.3e-96 357.8 266 66.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 3.7e-88 329.7 263 56.7
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.9e-73 280.8 185 60.5
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.2e-69 267.3 184 69.0
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 5.0e-69 266.2 160 71.9
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.7e-67 260.4 240 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.9e-66 256.5 223 56.1
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.4e-58 231.5 158 65.8
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.7e-53 214.5 129 69.0
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 7.7e-46 189.1 129 63.6
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 1.6e-30 138.3 384 27.9
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.9e-30 136.3 402 28.4
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.1e-28 132.1 86 72.1
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.2e-19 102.1 356 28.1
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 4.7e-19 100.1 345 25.8
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.0e-13 80.1 54 74.1
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 7.3e-12 76.3 80 57.5
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.3e-10 71.2 91 40.7
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 2.3e-10 71.2 55 56.4
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.2e-08 64.7 166 31.3
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 2.9e-08 64.3 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 2.9e-08 64.3 61 52.5
Rhsim13G0060400 Rhododendron simsii HOM05D001179 ORTHO05D339156 4.6e-06 57.0 64 45.3
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 7.8e-06 56.2 241 21.2


User provided reference genes

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