Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.2e-269 932.6 478 100.0
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 3.5e-216 755.0 426 89.7
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 7.7e-211 737.3 426 87.8
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 3.3e-206 721.8 426 85.0
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.0e-199 700.3 426 82.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 4.8e-197 691.4 426 81.5
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 3.5e-195 685.3 426 81.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.0e-194 683.7 426 80.3
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 7.5e-190 667.5 428 79.0
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 7.7e-187 657.5 428 78.7
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.3e-186 656.8 435 77.5
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.2e-182 643.7 428 75.9
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 5.9e-179 631.3 426 75.6
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 7.2e-177 624.4 423 74.9
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.1e-176 622.9 427 74.7
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.6e-176 622.1 427 74.2
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 6.8e-175 617.8 427 73.3
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.5e-174 616.7 427 74.0
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 8.3e-173 610.9 427 73.1
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 4.1e-172 608.6 427 71.9
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 7.0e-172 607.8 424 71.9
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.6e-171 606.7 427 72.1
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 2.7e-171 605.9 424 73.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.5e-171 605.5 427 72.6
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.9e-171 604.7 427 71.9
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.9e-171 604.7 427 71.9
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.0e-170 604.0 427 71.9
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.0e-170 604.0 427 71.9
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.3e-170 603.6 427 71.9
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.3e-170 603.6 427 71.2
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.7e-170 603.2 427 71.0
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 2.3e-170 602.8 424 70.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.6e-170 601.3 427 71.4
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.6e-170 601.3 427 71.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.1e-169 600.5 427 71.7
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.1e-169 600.5 426 71.8
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.5e-169 600.1 427 71.0
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 4.3e-169 598.6 427 70.7
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 2.1e-168 596.3 427 72.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 6.1e-168 594.7 427 71.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 6.1e-168 594.7 427 70.5
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.0e-168 594.3 424 69.6
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 8.0e-168 594.3 427 70.5
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-167 593.2 427 70.5
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.0e-167 592.4 427 70.0
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 6.8e-167 591.3 424 69.3
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.5e-166 590.1 428 69.9
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.0e-166 589.7 427 71.4
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.0e-166 589.7 427 69.6
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.6e-166 589.3 427 71.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.6e-166 589.3 424 69.1
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 7.5e-166 587.8 424 70.5
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.7e-165 586.6 434 69.4
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.9e-165 585.9 424 68.9
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 2.9e-165 585.9 427 68.6
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 4.1e-164 582.0 428 70.6
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 9.2e-164 580.9 427 68.9
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 9.2e-164 580.9 427 67.9
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.0e-163 579.7 428 69.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.0e-162 575.9 428 69.6
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.5e-161 573.5 428 69.6
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.5e-161 572.8 424 68.6
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.3e-161 572.4 427 68.1
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 3.3e-161 572.4 425 69.4
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.3e-161 572.0 427 68.9
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 7.3e-161 571.2 424 69.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.8e-160 569.3 462 67.1
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 3.6e-160 568.9 427 69.3
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 8.0e-160 567.8 424 70.0
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.2e-159 565.1 466 63.1
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.8e-159 564.7 431 65.7
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 5.8e-158 561.6 405 69.6
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.9e-156 556.6 425 67.5
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 4.1e-156 555.4 461 64.9
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 4.1e-156 555.4 444 65.3
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 9.2e-156 554.3 425 66.8
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 3.5e-155 552.4 427 66.7
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 1.2e-152 543.9 427 67.0
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.5e-150 537.0 425 67.5
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.5e-150 534.6 424 63.2
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 3.7e-149 532.3 434 64.5
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 6.0e-147 525.0 385 69.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 7.8e-147 524.6 424 62.0
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-146 523.9 427 63.5
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 3.9e-146 522.3 427 64.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.5e-145 520.4 427 63.5
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.5e-145 520.4 428 61.9
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 7.3e-145 518.1 429 62.9
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.8e-144 516.2 427 62.3
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 8.1e-144 514.6 426 62.4
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 8.1e-144 514.6 418 62.0
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.4e-143 513.8 428 63.3
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.4e-143 513.8 428 62.6
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 3.1e-143 512.7 428 62.4
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.1e-143 512.7 427 64.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 4.0e-143 512.3 428 62.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.0e-143 512.3 427 62.3
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 8.9e-143 511.1 427 61.1
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.5e-142 510.4 428 62.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.0e-142 510.0 427 62.3
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.7e-141 505.8 428 62.6
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.7e-141 505.8 428 61.7
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 3.7e-141 505.8 427 61.1
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 3.2e-140 502.7 428 62.4
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 4.6e-139 498.8 427 61.6
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 4.6e-139 498.8 427 61.6
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 6.0e-139 498.4 428 61.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.0e-138 496.1 427 61.1
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.9e-138 495.7 427 60.4
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.1e-138 495.4 428 60.5
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 5.1e-138 495.4 427 60.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 8.6e-138 494.6 439 62.0
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.9e-137 493.4 325 75.7
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 7.3e-137 491.5 427 61.6
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.8e-136 489.6 314 77.7
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 4.7e-136 488.8 428 60.3
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 4.4e-134 482.3 380 65.5
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 5.8e-134 481.9 428 59.6
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.1e-128 463.4 388 61.6
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.8e-128 463.0 360 63.9
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.5e-126 457.2 426 55.2
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.3e-125 454.1 446 55.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.7e-125 453.8 428 53.3
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 4.6e-123 445.7 430 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 7.9e-123 444.9 452 51.8
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.5e-118 430.6 391 59.6
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.3e-112 411.0 429 51.7
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.6e-107 394.0 398 54.3
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.8e-104 383.3 242 80.6
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.7e-98 362.1 286 62.2
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.5e-97 360.1 240 75.8
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 9.7e-97 358.2 337 56.7
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.8e-96 356.7 360 55.3
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.4e-92 344.4 357 54.6
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.6e-91 340.9 428 49.3
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.5e-68 264.6 432 38.2
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-67 260.8 215 63.3
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-62 245.0 326 46.3
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 3.2e-60 236.9 342 40.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.8e-55 221.1 177 64.4
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-53 214.9 195 60.5
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-50 204.1 375 38.9
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.9e-48 197.2 195 56.4
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.2e-47 193.7 306 41.8
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 2.2e-40 171.0 142 59.2
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.2e-39 167.2 251 41.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 5.2e-34 149.8 336 31.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-28 132.1 105 68.6
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.5e-28 131.7 149 49.0
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.1e-27 127.9 120 53.3
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 5.4e-23 113.2 76 71.1
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 3.0e-21 107.5 76 67.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 3.0e-21 107.5 76 67.1
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 2.1e-19 101.3 125 43.2
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 6.9e-18 96.3 330 24.8
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 3.3e-12 77.4 61 65.6
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.8e-11 73.6 53 66.0
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 6.2e-11 73.2 53 73.6
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 6.2e-11 73.2 62 59.7
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 8.4e-08 62.8 75 48.0
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 1.1e-07 62.4 38 71.1
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.1e-07 59.7 133 35.3
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.5e-06 57.4 52 55.8
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 4.6e-06 57.0 209 27.3
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 6.0e-06 56.6 49 59.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.0e-06 56.6 49 59.2


User provided reference genes

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