Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 1.5e-21 105.1 47 100.0
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 1.5e-21 105.1 47 100.0
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 3.2e-21 104.0 47 97.9
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 3.2e-21 104.0 47 97.9
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 3.2e-21 104.0 47 97.9
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 7.2e-21 102.8 47 95.7
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 9.4e-21 102.4 47 95.7
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 9.4e-21 102.4 47 93.6
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 1.6e-20 101.7 47 95.7
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 2.7e-20 100.9 47 93.6
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 3.6e-20 100.5 47 93.6
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 6.1e-20 99.8 47 91.5
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 6.1e-20 99.8 47 91.5
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 8.0e-20 99.4 47 91.5
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 2.3e-19 97.8 47 89.4
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 4.0e-19 97.1 47 89.4
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 4.0e-19 97.1 47 89.4
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 4.0e-19 97.1 47 87.2
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 4.0e-19 97.1 47 89.4
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 6.7e-19 96.3 47 89.4
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 1.5e-18 95.1 47 85.1
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.0e-18 94.7 47 87.2
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.0e-18 94.7 47 87.2
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.0e-18 94.7 47 87.2
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 2.0e-18 94.7 47 87.2
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 2.0e-18 94.7 47 87.2
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.6e-18 94.4 47 87.2
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.6e-18 94.4 47 87.2
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 2.6e-18 94.4 47 83.0
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 2.6e-18 94.4 47 87.2
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 3.3e-18 94.0 47 85.1
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 3.3e-18 94.0 47 83.0
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 3.3e-18 94.0 47 83.0
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 3.3e-18 94.0 47 85.1
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 3.3e-18 94.0 47 83.0
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 87.2
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 87.2
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 85.1
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 83.0
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 87.2
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 83.0
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 83.0
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 4.4e-18 93.6 47 83.0
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 5.7e-18 93.2 47 85.1
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 5.7e-18 93.2 47 87.2
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 7.4e-18 92.8 47 80.9
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 1.3e-17 92.0 47 85.1
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.3e-17 92.0 47 85.1
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 1.3e-17 92.0 47 78.7
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 1.7e-17 91.7 47 85.1
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.7e-17 91.7 47 80.9
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 1.7e-17 91.7 47 78.7
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 2.2e-17 91.3 47 80.9
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 2.2e-17 91.3 47 80.9
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 2.2e-17 91.3 47 80.9
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 2.2e-17 91.3 47 83.0
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 2.8e-17 90.9 47 80.9
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 4.8e-17 90.1 47 78.7
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 4.8e-17 90.1 47 83.0
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 4.8e-17 90.1 47 80.9
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 4.8e-17 90.1 47 80.9
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 6.3e-17 89.7 47 83.0
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 6.3e-17 89.7 47 83.0
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 6.3e-17 89.7 47 80.9
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 8.2e-17 89.4 47 80.9
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 8.2e-17 89.4 47 80.9
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 1.1e-16 89.0 47 83.0
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 1.1e-16 89.0 47 78.7
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 1.4e-16 88.6 47 83.0
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 83.0
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 83.0
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 83.0
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 83.0
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 76.6
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 76.6
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 4.1e-16 87.0 47 78.7
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 5.3e-16 86.7 47 76.6
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 5.3e-16 86.7 47 76.6
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 5.3e-16 86.7 47 76.6
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 5.3e-16 86.7 47 76.6
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 5.3e-16 86.7 47 78.7
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 5.3e-16 86.7 47 76.6
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 7.0e-16 86.3 47 78.7
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 7.0e-16 86.3 47 78.7
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 9.1e-16 85.9 47 76.6
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 9.1e-16 85.9 48 79.2
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 9.1e-16 85.9 47 78.7
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 9.1e-16 85.9 47 78.7
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 1.6e-15 85.1 47 70.2
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.0e-15 84.7 47 74.5
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.0e-15 84.7 47 74.5
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 2.6e-15 84.3 47 74.5
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 2.6e-15 84.3 47 76.6
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 3.5e-15 84.0 47 74.5
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 3.5e-15 84.0 47 74.5
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 4.5e-15 83.6 47 76.6
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 4.5e-15 83.6 47 74.5
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 7.7e-15 82.8 47 74.5
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 7.7e-15 82.8 47 78.7
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 2.2e-14 81.3 47 70.2
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 5.0e-14 80.1 47 72.3
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 3.2e-13 77.4 47 66.0
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 9.4e-13 75.9 39 84.6
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 9.4e-13 75.9 47 63.8
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 2.3e-11 71.2 47 70.2
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 3.0e-11 70.9 38 76.3
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 5.7e-10 66.6 38 68.4
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 2.8e-09 64.3 47 61.7


User provided reference genes

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