Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 5.2e-202 707.6 384 100.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.0e-169 599.4 384 82.8
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 3.4e-169 598.6 384 83.3
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 2.1e-166 589.3 384 81.5
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 4.3e-156 555.1 384 76.6
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 1.9e-151 539.7 386 74.9
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 2.7e-150 535.8 391 74.7
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 7.9e-150 534.3 389 74.3
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.3e-149 533.5 385 73.8
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.3e-148 528.9 385 73.8
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.2e-147 524.2 387 72.6
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.5e-145 520.0 386 72.3
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.5e-145 520.0 387 71.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 5.9e-145 518.1 389 72.0
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.2e-144 516.2 394 70.8
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 5.0e-144 515.0 386 72.3
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 2.5e-143 512.7 384 70.6
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.5e-143 512.7 389 71.2
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 7.2e-143 511.1 384 71.1
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.2e-142 510.4 384 70.8
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 4.6e-142 508.4 383 70.5
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.1e-142 508.1 384 70.6
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.0e-141 507.3 390 70.3
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.0e-141 507.3 380 72.4
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.4e-141 506.9 394 70.8
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 1.8e-141 506.5 384 70.3
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 2.3e-141 506.1 384 70.3
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.1e-140 503.8 393 70.5
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 2.5e-140 502.7 394 69.8
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.5e-140 502.7 384 70.1
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 3.3e-140 502.3 382 70.9
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 5.7e-140 501.5 404 67.6
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 3.7e-139 498.8 400 68.0
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 4.8e-139 498.4 386 69.4
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 6.3e-139 498.0 385 69.4
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 8.2e-139 497.7 384 69.8
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.1e-138 497.3 404 67.6
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.8e-138 496.5 384 69.3
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.8e-138 496.5 384 69.3
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.8e-138 496.5 384 68.8
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.8e-138 496.5 386 68.9
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.4e-138 496.1 384 69.5
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 2.4e-138 496.1 384 69.0
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 3.1e-138 495.7 384 69.0
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 4.1e-138 495.4 386 68.9
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 5.3e-138 495.0 388 69.3
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 9.1e-138 494.2 386 68.4
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.2e-137 493.8 386 69.2
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.5e-137 493.4 384 68.8
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 3.4e-137 492.3 384 69.0
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.0e-136 490.7 384 69.0
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 2.9e-136 489.2 391 68.0
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 5.0e-136 488.4 384 68.0
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 5.0e-136 488.4 384 68.0
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 5.0e-136 488.4 385 68.3
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 6.5e-136 488.0 384 68.0
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 6.5e-136 488.0 384 68.0
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 6.5e-136 488.0 384 68.0
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 6.5e-136 488.0 386 68.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.4e-135 486.9 364 70.9
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.9e-135 486.5 386 67.9
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.9e-135 486.5 388 68.3
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.9e-135 486.5 387 68.5
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 2.5e-135 486.1 384 68.5
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.2e-135 485.3 384 67.4
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 5.5e-135 485.0 390 67.4
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 9.4e-135 484.2 387 66.9
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 9.4e-135 484.2 364 70.3
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 2.1e-134 483.0 384 68.5
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.1e-134 483.0 387 68.0
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 2.7e-134 482.6 364 70.1
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.6e-134 482.3 386 67.1
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 3.6e-134 482.3 388 67.8
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 4.7e-134 481.9 389 66.6
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 4.7e-134 481.9 389 66.6
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.7e-134 481.9 388 67.5
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 6.1e-134 481.5 364 70.1
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 6.1e-134 481.5 388 66.5
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 6.1e-134 481.5 388 67.8
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 7.9e-134 481.1 384 68.2
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 1.0e-133 480.7 389 66.6
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.0e-133 480.7 384 66.7
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.0e-133 480.7 388 67.8
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.4e-133 480.3 386 68.1
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 1.8e-133 479.9 385 68.1
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 1.8e-133 479.9 387 66.7
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 2.3e-133 479.6 390 67.4
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 3.9e-133 478.8 405 65.9
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 5.1e-133 478.4 386 67.9
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 8.8e-133 477.6 386 67.1
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 1.1e-132 477.2 393 65.6
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.1e-132 477.2 364 69.5
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 2.6e-132 476.1 388 66.2
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.6e-132 476.1 389 65.8
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 3.3e-132 475.7 384 68.2
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 4.4e-132 475.3 364 69.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 7.4e-132 474.6 392 66.6
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.2e-131 473.0 389 65.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 8.2e-131 471.1 384 66.1
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.1e-130 470.7 378 66.9
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.1e-130 470.7 384 65.9
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.1e-130 470.7 384 65.6
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 9.1e-130 467.6 389 64.0
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 2.0e-129 466.5 384 65.4
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 3.5e-129 465.7 389 63.5
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 7.7e-129 464.5 389 63.2
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 3.8e-128 462.2 382 64.9
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 6.5e-128 461.5 379 64.9
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 9.4e-127 457.6 371 67.1
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 5.7e-124 448.4 388 64.9
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 7.5e-124 448.0 384 62.8
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 4.1e-122 442.2 389 63.2
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 5.3e-122 441.8 386 62.7
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.0e-120 437.6 386 61.1
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 3.6e-118 429.1 388 61.6
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 3.6e-118 429.1 388 61.6
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.1e-118 428.3 385 62.6
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 2.6e-116 422.9 389 59.1
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 3.4e-116 422.5 388 59.3
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 4.4e-116 422.2 388 59.5
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 7.5e-116 421.4 357 60.2
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 8.3e-115 417.9 384 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.1e-114 415.6 356 60.4
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 2.7e-113 412.9 381 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.5e-113 412.1 372 57.3
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 9.5e-111 404.4 356 59.0
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 8.0e-110 401.4 385 59.7
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.4e-109 400.6 385 60.5
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.0e-109 399.4 343 61.8
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.8e-106 390.2 333 63.1
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.8e-106 390.2 333 63.1
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 7.0e-106 388.3 384 56.5
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.1e-103 380.9 364 57.7
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.3e-101 373.2 359 54.6
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.1e-98 364.4 363 54.3
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 2.7e-97 359.8 368 51.9
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 1.0e-96 357.8 318 61.9
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 5.0e-88 328.9 272 65.4
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-85 321.2 296 60.1
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.5e-81 306.2 269 60.2
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 7.8e-81 305.1 249 65.5
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.1e-78 297.0 339 49.3
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.6e-73 279.3 212 67.9
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 5.6e-71 272.3 266 57.5
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.1e-64 249.2 179 65.9
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.1e-64 249.2 179 65.9
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 3.0e-56 223.4 127 85.0
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.5e-55 221.1 226 57.5
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.8e-53 214.2 123 85.4
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.4e-50 204.5 122 77.9
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.3e-48 197.2 206 51.5
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.0e-48 196.8 117 81.2
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 4.8e-38 162.9 205 46.8
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.1e-37 159.8 145 55.9
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.1e-34 151.8 205 46.8
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 7.9e-33 145.6 205 45.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 5.5e-26 122.9 92 72.8
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 7.9e-25 119.0 70 80.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.6e-23 114.0 163 42.9
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.4e-21 107.5 86 67.4
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 9.1e-21 105.5 159 45.9
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 6.7e-16 89.4 69 65.2
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 8.8e-16 89.0 78 59.0
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.7e-15 86.3 118 43.2
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 2.9e-11 73.9 147 38.1
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 2.5e-10 70.9 66 62.1
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.5e-10 70.9 49 69.4


User provided reference genes

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