Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 5.4e-101 370.9 180 100.0
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.6e-84 316.2 184 87.5
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.2e-78 295.8 182 82.4
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.2e-78 295.8 182 82.4
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 2.5e-69 265.8 166 80.7
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 7.4e-66 254.2 182 72.5
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 5.3e-64 248.1 186 71.5
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 7.9e-60 234.2 189 65.1
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 7.9e-60 234.2 177 68.4
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.0e-59 233.8 187 68.4
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.0e-59 233.8 203 62.6
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.8e-59 233.0 190 64.7
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.0e-59 232.3 192 64.1
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 8.8e-59 230.7 192 63.5
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 8.8e-59 230.7 172 68.6
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 8.8e-59 230.7 202 63.4
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 2.0e-58 229.6 189 64.6
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 4.4e-58 228.4 192 65.6
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 2.2e-57 226.1 192 62.0
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.7e-57 225.3 193 62.7
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 4.8e-57 224.9 209 59.8
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 4.8e-57 224.9 202 59.9
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 4.8e-57 224.9 192 64.1
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.3e-57 224.6 189 62.4
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 8.2e-57 224.2 193 62.2
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.4e-56 222.6 192 61.5
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.2e-55 220.3 125 82.4
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.5e-55 219.9 118 86.4
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.5e-55 219.9 192 60.4
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.5e-55 219.9 182 63.7
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 2.6e-55 219.2 187 62.6
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 3.4e-55 218.8 196 60.7
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 3.4e-55 218.8 202 58.4
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 7.7e-55 217.6 113 88.5
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.7e-54 216.5 191 60.7
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.7e-54 216.5 185 62.7
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.9e-54 215.7 197 60.4
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.9e-54 215.7 120 83.3
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 2.9e-54 215.7 195 60.5
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 2.9e-54 215.7 137 75.9
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 5.0e-54 214.9 193 60.6
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 5.0e-54 214.9 193 63.7
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 6.5e-54 214.5 195 60.5
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 6.5e-54 214.5 184 63.6
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 6.5e-54 214.5 206 58.3
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 8.5e-54 214.2 175 64.0
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 8.5e-54 214.2 192 59.9
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.1e-53 213.8 172 65.7
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.1e-53 213.8 150 70.7
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 1.1e-53 213.8 212 55.2
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.1e-53 213.8 206 57.3
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.9e-53 213.0 194 60.3
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 3.2e-53 212.2 196 59.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 3.2e-53 212.2 182 61.5
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 5.5e-53 211.5 186 60.2
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 5.5e-53 211.5 194 58.8
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 5.5e-53 211.5 197 59.9
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 9.4e-53 210.7 188 61.7
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.2e-52 210.3 125 79.2
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 1.2e-52 210.3 195 57.9
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 2.1e-52 209.5 187 61.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 2.7e-52 209.1 194 59.3
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.7e-52 209.1 212 54.2
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 3.6e-52 208.8 195 58.5
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 3.6e-52 208.8 139 72.7
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 6.1e-52 208.0 191 59.2
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 7.9e-52 207.6 124 79.0
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.0e-51 207.2 191 59.2
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.4e-51 206.8 190 57.9
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 5.2e-51 204.9 188 60.1
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 5.2e-51 204.9 188 60.1
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 5.2e-51 204.9 188 60.1
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 5.2e-51 204.9 170 62.9
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 8.8e-51 204.1 194 60.3
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.1e-50 203.8 152 67.1
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.5e-50 203.4 194 57.7
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 2.6e-50 202.6 202 56.9
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 4.4e-50 201.8 200 57.0
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 7.4e-50 201.1 202 56.4
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 9.7e-50 200.7 204 54.9
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 1.7e-49 199.9 196 56.1
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 2.2e-49 199.5 187 56.7
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 2.8e-49 199.1 193 57.5
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.8e-49 199.1 145 66.9
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 3.7e-49 198.7 143 65.0
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.8e-49 198.4 175 57.7
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 4.8e-49 198.4 182 57.7
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 4.8e-49 198.4 118 77.1
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 6.3e-49 198.0 195 57.4
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.1e-48 197.2 196 57.1
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 2.4e-48 196.1 178 59.6
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 7.0e-48 194.5 187 56.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.2e-47 193.7 179 57.5
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.6e-47 193.4 210 54.8
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.6e-47 192.6 137 68.6
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 3.5e-47 192.2 184 59.8
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 4.5e-47 191.8 170 57.6
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.0e-46 190.7 137 67.2
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.3e-46 190.3 196 53.6
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 1.7e-46 189.9 185 54.6
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.2e-46 189.5 127 70.1
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 3.8e-46 188.7 113 75.2
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 6.5e-46 188.0 113 75.2
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.1e-45 187.2 156 60.9
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 9.4e-45 184.1 133 68.4
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.1e-44 183.0 187 52.9
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.0e-43 180.6 140 61.4
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.5e-42 176.8 136 63.2
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.5e-42 176.8 187 51.3
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 4.4e-42 175.3 109 72.5
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 7.5e-42 174.5 163 58.9
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 7.5e-42 174.5 127 64.6
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.3e-41 173.7 130 64.6
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 2.2e-41 172.9 167 57.5
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 3.7e-41 172.2 116 69.0
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.4e-40 170.2 113 69.0
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.8e-40 169.9 121 65.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 1.2e-39 167.2 108 70.4
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.6e-36 156.8 171 51.5
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 2.7e-36 156.0 111 63.1
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.5e-34 150.2 163 52.1
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.3e-30 136.3 149 45.6
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 5.0e-30 135.2 115 53.9
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 4.2e-29 132.1 143 55.9
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 2.8e-25 119.4 133 45.9
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 4.3e-21 105.5 93 49.5
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.1e-13 80.9 83 49.4
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.7e-06 57.0 142 33.8


User provided reference genes

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