Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 7.6e-300 1033.1 536 100.0
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.5e-234 814.3 529 81.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.5e-226 789.6 538 76.4
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.1e-197 691.8 533 66.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.3e-186 655.6 466 73.8
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 3.4e-175 619.0 521 63.5
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 5.6e-170 601.7 538 59.3
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.1e-168 595.9 538 59.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 3.1e-168 595.9 553 61.5
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 6.9e-160 568.2 524 59.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.0e-159 566.6 567 56.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-151 540.4 534 55.8
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.0e-135 486.9 519 53.2
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.5e-133 478.8 484 54.8
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-132 477.2 503 52.5
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-132 477.2 503 52.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 7.9e-132 474.9 487 53.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.6e-130 469.9 513 51.3
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.3e-129 467.6 480 53.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 7.0e-128 461.8 469 53.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 5.0e-126 455.7 491 51.1
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.5e-125 454.1 491 51.1
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.9e-125 453.8 488 51.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 3.2e-125 453.0 485 53.2
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.2e-125 452.6 491 51.1
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 5.5e-125 452.2 498 50.4
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 6.7e-123 445.3 480 52.5
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.0e-120 435.3 528 47.9
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.3e-118 431.0 515 46.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.3e-118 431.0 485 52.6
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.3e-118 431.0 488 48.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.5e-118 428.7 539 47.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.1e-116 423.7 432 53.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 6.1e-116 422.2 490 47.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 8.0e-116 421.8 484 49.0
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.8e-115 420.6 481 51.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 5.2e-115 419.1 492 49.4
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.2e-114 417.9 480 47.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.4e-114 416.4 415 53.7
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 4.4e-114 416.0 481 47.6
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 5.7e-114 415.6 519 47.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 9.8e-114 414.8 489 48.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 9.8e-114 414.8 515 48.7
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.2e-113 413.7 495 48.9
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.2e-113 413.7 487 48.5
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.4e-112 411.0 547 44.6
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.8e-112 410.6 525 46.7
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.4e-112 409.1 536 44.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 5.4e-112 409.1 384 56.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 3.5e-111 406.4 549 45.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.7e-110 404.1 491 47.3
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.3e-110 403.7 515 47.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 6.5e-110 402.1 545 45.9
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 6.5e-110 402.1 550 43.8
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 8.6e-110 401.7 415 51.1
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.5e-109 400.2 481 46.6
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 3.2e-109 399.8 494 49.0
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.6e-108 397.5 490 46.5
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.8e-108 396.7 491 46.0
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.3e-107 393.7 479 48.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 6.8e-107 392.1 540 44.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.2e-106 391.3 538 43.5
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 7.5e-106 388.7 521 44.3
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 7.5e-106 388.7 423 51.3
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 7.5e-106 388.7 504 45.6
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.8e-105 386.7 489 48.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.7e-105 386.3 537 45.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.3e-105 385.6 417 50.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.8e-104 384.0 420 51.2
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.0e-104 382.1 541 42.3
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.6e-103 380.9 478 46.9
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.0e-103 380.6 489 45.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.8e-103 378.6 494 44.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.7e-102 377.5 534 43.3
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 8.6e-102 375.2 562 42.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.3e-101 373.2 506 43.3
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 4.7e-100 369.4 510 43.5
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.3e-99 367.1 463 43.6
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.0e-99 366.7 558 41.9
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 5.2e-99 365.9 483 42.2
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-98 364.8 484 42.4
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.6e-98 363.6 533 43.5
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-97 360.1 500 41.2
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.9e-97 360.1 500 41.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.9e-97 360.1 500 41.2
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 3.7e-97 359.8 492 44.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.3e-97 358.6 483 43.3
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.8e-96 357.5 483 43.1
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 7.0e-96 355.5 516 41.7
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.2e-96 355.1 462 45.2
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.6e-95 352.8 408 48.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 8.6e-94 348.6 482 41.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 9.5e-93 345.1 567 40.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.6e-92 344.4 530 40.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-91 341.7 483 42.0
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.8e-91 340.9 479 42.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.4e-90 336.7 487 43.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 5.4e-88 329.3 479 39.9
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.5e-85 321.2 512 38.7
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.9e-85 320.9 491 38.5
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.6e-85 319.3 481 41.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.6e-85 319.3 460 39.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 2.8e-84 317.0 402 51.0
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.7e-84 316.2 503 40.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.1e-83 313.5 397 46.3
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 4.0e-83 313.2 484 39.0
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 4.9e-81 306.2 374 48.7
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-79 301.6 517 37.5
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.1e-67 260.4 297 50.2
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.9e-65 253.8 327 47.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.8e-65 253.4 234 56.0
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.4e-64 250.8 324 48.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.3e-61 240.0 534 32.4
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.4e-58 230.3 352 43.8
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.6e-55 219.9 359 39.6
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.5e-53 214.2 147 68.7
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.0e-51 206.8 299 44.5
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.0e-50 204.5 321 39.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.9e-49 199.9 241 43.2
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.9e-48 198.0 182 53.8
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.9e-48 198.0 225 49.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.2e-39 168.7 291 34.7
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 3.9e-38 163.7 249 36.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.0e-33 146.7 281 33.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.0e-33 146.7 281 33.5
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.5e-32 144.4 229 36.7
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.5e-29 134.4 215 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 4.3e-29 133.7 298 31.5
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.3e-29 133.7 97 62.9
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.3e-29 133.7 97 62.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-25 122.1 201 37.8
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.0e-25 120.2 270 31.5
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 3.0e-22 110.9 333 25.8
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.4e-19 102.1 129 42.6
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-18 98.6 332 24.1
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.7e-17 95.1 118 44.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-16 92.4 163 39.3
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 6.1e-15 86.7 266 28.2
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 5.2e-14 83.6 146 33.6
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 5.2e-14 83.6 146 33.6
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 5.2e-14 83.6 146 33.6
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 9.7e-13 79.3 146 30.8
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 9.7e-13 79.3 146 30.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.8e-12 77.0 65 53.8


User provided reference genes

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