Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 0.0e+00 1437.6 730 100.0
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 0.0e+00 1245.0 731 87.0
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 0.0e+00 1226.1 731 85.0
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 0.0e+00 1213.0 727 84.9
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 8.5e-286 986.9 721 70.6
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 9.7e-282 973.4 736 68.6
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.8e-280 969.1 715 69.5
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 4.1e-264 914.8 714 66.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.5e-253 879.8 715 64.1
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 4.5e-247 858.2 731 61.8
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 4.5e-247 858.2 731 61.8
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.1e-235 820.5 719 58.8
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.9e-232 809.7 720 58.6
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 4.9e-225 785.0 719 56.7
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 5.1e-222 775.0 717 55.6
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 1.6e-220 770.0 722 55.8
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.0e-214 749.2 712 54.8
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 9.0e-211 737.6 717 53.6
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.2e-210 737.3 724 54.7
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 4.4e-210 735.3 719 54.2
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 5.8e-210 734.9 717 54.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 7.6e-210 734.6 717 54.1
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 2.4e-208 729.6 671 57.1
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 7.8e-207 724.5 767 51.5
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.0e-206 724.2 720 53.9
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 3.3e-205 719.2 716 52.4
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 3.8e-201 705.7 730 51.5
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 3.8e-201 705.7 723 51.3
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 8.4e-201 704.5 725 50.8
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 7.9e-199 698.0 761 50.1
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.4e-194 682.6 723 50.5
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 5.8e-194 681.8 717 51.2
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.7e-193 680.2 718 51.0
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 8.4e-193 677.9 718 51.8
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.1e-192 677.6 724 51.2
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.0e-190 671.0 722 51.5
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.3e-190 670.6 724 51.1
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.3e-190 670.6 709 52.5
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.8e-190 670.2 796 47.4
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 3.0e-190 669.5 720 51.0
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 5.1e-190 668.7 714 50.4
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.1e-189 667.5 714 51.1
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 3.3e-189 666.0 721 50.9
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 4.3e-189 665.6 721 48.7
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 7.4e-189 664.8 369 93.2
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 2.1e-188 663.3 829 46.2
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.8e-188 662.9 721 48.7
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 6.9e-187 658.3 730 48.4
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.4e-186 656.0 716 49.9
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.4e-186 656.0 719 50.6
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.9e-185 652.1 724 48.5
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 4.9e-185 652.1 714 50.1
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 6.5e-185 651.7 712 51.0
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.1e-184 651.0 724 49.3
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.9e-184 650.2 718 49.6
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.9e-184 650.2 725 48.6
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.5e-184 649.8 763 48.4
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 3.2e-184 649.4 723 47.2
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 7.1e-184 648.3 720 49.9
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 9.3e-184 647.9 719 49.8
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.6e-183 647.1 719 49.8
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 4.6e-183 645.6 716 49.9
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 5.5e-176 622.1 714 46.8
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 4.3e-173 612.5 714 46.5
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 7.4e-173 611.7 721 47.9
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 6.3e-172 608.6 620 52.4
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 1.8e-171 607.1 691 47.3
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 7.7e-170 601.7 723 46.1
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 3.8e-169 599.4 666 49.1
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 6.5e-169 598.6 712 46.5
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 5.5e-168 595.5 715 46.9
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 7.2e-168 595.1 718 46.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.8e-163 580.5 791 43.5
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 5.3e-163 578.9 723 45.4
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 5.0e-161 572.4 719 45.3
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 4.2e-160 569.3 719 44.4
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.5e-160 568.9 552 54.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.4e-160 568.2 645 48.2
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 8.0e-159 565.1 759 44.5
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.8e-158 563.9 787 42.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 5.0e-153 545.8 721 44.1
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 6.3e-148 528.9 334 83.5
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.1e-147 528.1 634 47.3
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 4.1e-147 526.2 721 40.2
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 8.5e-145 518.5 591 49.7
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 8.5e-145 518.5 551 50.1
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 4.0e-142 509.6 551 51.0
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 8.8e-142 508.4 758 41.8
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 2.0e-141 507.3 706 42.8
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.3e-140 504.6 787 37.5
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.0e-137 495.0 486 54.5
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.1e-136 491.5 749 42.1
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 2.9e-129 466.8 724 38.4
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 9.8e-125 451.8 555 45.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.6e-122 443.0 740 35.9
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.3e-121 441.4 625 42.9
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 6.0e-106 389.4 632 40.3
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 9.5e-104 382.1 493 44.8
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 3.1e-102 377.1 493 45.0
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 2.1e-90 337.8 259 66.4
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 4.8e-87 326.6 380 46.3
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.1e-71 274.6 196 73.5
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 5.3e-70 270.0 261 55.2
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 4.1e-62 243.8 402 38.3
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 3.2e-51 207.6 550 29.3
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 9.4e-51 206.1 253 48.2
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 9.4e-51 206.1 253 48.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 2.0e-40 171.8 170 55.9
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 8.2e-39 166.4 569 24.8
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.6e-37 162.2 472 27.3
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.3e-36 159.1 164 48.8
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.2e-32 146.0 145 52.4
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.2e-32 146.0 145 52.4
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 2.0e-32 145.2 733 22.8
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 3.0e-25 121.3 550 22.5
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 3.4e-24 117.9 116 48.3
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 9.8e-24 116.3 475 23.4
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 2.3e-20 105.1 117 45.3
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 4.6e-13 80.9 78 52.6
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.4e-09 69.3 34 94.1
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 2.3e-09 68.6 384 20.6
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 5.2e-09 67.4 390 19.7
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.5e-08 65.9 378 20.4
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 2.0e-08 65.5 383 20.6
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 2.0e-08 65.5 181 28.2
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.6e-08 65.1 219 23.7
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 2.6e-08 65.1 78 42.3
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 2.6e-08 65.1 387 21.2
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 4.4e-08 64.3 235 24.3
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 7.5e-08 63.5 76 50.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.7e-07 61.2 219 23.3
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 3.7e-07 61.2 397 18.9
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 8.3e-07 60.1 235 23.8
AL1G44660 Arabidopsis lyrata HOM05D002785 ORTHO05D003042 1.1e-06 59.7 175 28.6
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 1.9e-06 58.9 387 19.1
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 1.9e-06 58.9 215 22.8
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 2.4e-06 58.5 376 20.5
CANSAT25G2315 Cannabis sativa HOM05D000001 ORTHO05D000003 3.2e-06 58.2 377 21.0
AUR62025364 Chenopodium quinoa HOM05D006258 ORTHO05D007961 3.2e-06 58.2 313 19.8
FAN08G2598 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.2e-06 58.2 134 32.1
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.2e-06 58.2 157 26.8
AagrBONN_evm.TU.Sc2ySwM_368.1090 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 57.8 388 19.1
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 4.1e-06 57.8 318 21.4
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 4.1e-06 57.8 195 24.1
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 4.1e-06 57.8 385 20.0
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 4.1e-06 57.8 388 19.8
Actinidia04475 Actinidia chinensis HOM05D000162 ORTHO05D000090 5.4e-06 57.4 146 22.6
DCAR_013239 Daucus carota HOM05D007390 ORTHO05D009114 5.4e-06 57.4 88 33.0
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 5.4e-06 57.4 34 73.5
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 5.4e-06 57.4 391 19.7
Cc05_g05570 Coffea canephora HOM05D000001 ORTHO05D000003 7.0e-06 57.0 366 20.5
TAR629G1245 Trochodendron aralioides HOM05D018609 ORTHO05D019561 7.0e-06 57.0 123 24.4
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 9.2e-06 56.6 239 23.4
EL10Ac5g11420 Beta vulgaris HOM05D007168 ORTHO05D009495 9.2e-06 56.6 208 24.5


User provided reference genes

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