Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 1.4e-126 456.8 330 100.0
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 2.1e-82 310.1 323 82.0
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 1.9e-75 287.0 333 76.6
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 1.6e-66 257.3 323 74.0
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 1.8e-54 217.2 339 61.1
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 1.6e-53 214.2 346 59.5
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 1.7e-52 210.7 336 65.2
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 3.0e-49 199.9 326 66.3
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 4.0e-49 199.5 331 64.7
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 3.7e-47 193.0 326 65.6
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 1.1e-43 181.4 203 57.1
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 4.0e-41 172.9 203 56.7
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 1.4e-38 164.5 253 73.1
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 9.2e-38 161.8 269 69.5
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 9.2e-38 161.8 259 70.7
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 8.6e-36 155.2 282 59.6
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 1.5e-35 154.5 223 48.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.6e-35 152.5 273 68.1
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 7.3e-35 152.1 270 68.1
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 1.0e-33 148.3 287 58.2
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 1.0e-33 148.3 270 67.4
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 6.8e-33 145.6 326 58.0
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 3.4e-32 143.3 261 60.9
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 2.2e-31 140.6 263 60.8
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 2.2e-31 140.6 267 64.4
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 2.2e-31 140.6 232 72.8
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 3.7e-31 139.8 335 57.6
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 3.7e-31 139.8 297 40.7
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 4.9e-31 139.4 296 55.1
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 4.9e-31 139.4 253 61.3
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 1.1e-30 138.3 266 68.0
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 1.1e-30 138.3 329 59.9
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 1.4e-30 137.9 298 61.7
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 3.2e-30 136.7 278 57.9
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 5.4e-30 136.0 259 67.2
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 2.7e-29 133.7 281 56.9
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 3.5e-29 133.3 264 60.2
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 4.6e-29 132.9 272 64.0
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 4.6e-29 132.9 271 64.2
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 6.0e-29 132.5 325 58.5
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 1.0e-28 131.7 284 57.7
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 1.3e-28 131.3 270 64.8
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 6.6e-28 129.0 328 58.2
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 3.3e-27 126.7 181 48.1
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 5.6e-27 125.9 238 67.2
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 7.3e-27 125.6 158 50.6
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 9.5e-27 125.2 272 63.2
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.6e-26 124.4 272 62.9
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 2.1e-26 124.0 286 55.2
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 4.7e-26 122.9 145 53.8
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 1.1e-25 121.7 265 56.6
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 1.1e-25 121.7 265 56.6
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 1.4e-25 121.3 251 36.7
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 4.0e-25 119.8 272 62.5
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 5.2e-25 119.4 246 65.0
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 5.2e-25 119.4 269 63.2
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 2.0e-24 117.5 150 50.7
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 2.6e-24 117.1 248 65.3
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 3.4e-24 116.7 286 59.4
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 9.8e-24 115.2 224 54.5
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.3e-23 114.8 156 48.1
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 2.2e-23 114.0 207 73.4
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.2e-23 114.0 85 71.8
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.9e-23 113.6 153 48.4
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.9e-23 113.6 153 48.4
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.9e-23 113.6 153 48.4
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 2.9e-23 113.6 293 57.0
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 3.7e-23 113.2 268 63.1
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 3.2e-22 110.2 248 64.5
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 1.2e-21 108.2 273 59.3
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 1.6e-21 107.8 249 63.1
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 1.6e-21 107.8 256 62.1
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 2.7e-21 107.1 202 71.8
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 3.5e-21 106.7 274 59.9
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 3.5e-21 106.7 271 53.5
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 4.6e-21 106.3 217 69.1
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 6.0e-21 105.9 258 62.0
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 7.8e-21 105.5 119 53.8
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 7.8e-21 105.5 318 52.8
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.0e-20 105.1 269 60.2
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 1.0e-20 105.1 129 50.4
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 1.3e-20 104.8 328 54.3
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.7e-20 104.4 161 44.7
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 3.0e-20 103.6 256 62.1
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 3.9e-20 103.2 126 55.6
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 8.6e-20 102.1 224 38.4
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 1.1e-19 101.7 276 59.8
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 1.5e-19 101.3 192 74.0
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 3.3e-19 100.1 258 54.3
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 8.1e-18 95.5 143 46.9
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 1.2e-16 91.7 153 43.8
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 2.0e-16 90.9 254 57.9
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 5.8e-16 89.4 246 59.8
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 3.7e-15 86.7 164 35.4
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 6.4e-15 85.9 290 54.5
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 8.4e-15 85.5 290 54.5
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 5.4e-14 82.8 192 35.4
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 1.3e-12 78.2 142 43.7
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 3.0e-12 77.0 151 39.7
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.9e-12 76.6 193 35.8
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 8.6e-12 75.5 85 44.7
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 1.5e-11 74.7 85 44.7
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.5e-11 74.7 99 44.4
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 1.9e-11 74.3 84 44.0
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 5.6e-11 72.8 90 43.3
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 7.3e-11 72.4 76 47.4
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 7.3e-11 72.4 85 44.7
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 7.3e-11 72.4 85 44.7
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 9.6e-11 72.0 85 43.5
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 1.6e-10 71.2 101 41.6
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 2.1e-10 70.9 150 36.0
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 2.1e-10 70.9 80 41.2
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 2.1e-10 70.9 95 41.1
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 2.1e-10 70.9 95 41.1
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 3.6e-10 70.1 52 61.5
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 1.1e-09 68.6 146 34.2
ECA080G0002 Erigeron canadensis HOM05D000340 ORTHO05D000821 1.1e-09 68.6 39 79.5
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.1e-09 68.6 85 41.2
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.4e-09 68.2 101 40.6
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 2.4e-09 67.4 101 39.6
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 3.1e-09 67.0 85 42.4
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 3.1e-09 67.0 142 33.1
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 3.1e-09 67.0 90 41.1
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 3.1e-09 67.0 78 44.9
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 4.0e-09 66.6 138 36.2
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 5.2e-09 66.2 140 35.0
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 5.2e-09 66.2 151 35.1
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 5.2e-09 66.2 148 33.1
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 6.8e-09 65.9 138 35.5
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 6.8e-09 65.9 97 37.1
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 6.8e-09 65.9 81 42.0
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 8.9e-09 65.5 93 37.6
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 8.9e-09 65.5 144 34.7
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 1.2e-08 65.1 136 38.2
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.2e-08 65.1 79 43.0
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 1.5e-08 64.7 83 42.2
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 2.6e-08 63.9 138 34.8
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 4.4e-08 63.2 92 38.0
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 4.4e-08 63.2 80 42.5
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 4.4e-08 63.2 79 40.5
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 5.8e-08 62.8 139 34.5
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 5.8e-08 62.8 79 43.0
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 7.6e-08 62.4 78 42.3
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 7.6e-08 62.4 157 38.9
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 9.9e-08 62.0 147 33.3
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 9.9e-08 62.0 84 40.5
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 9.9e-08 62.0 102 35.3
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 9.9e-08 62.0 84 39.3
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 1.3e-07 61.6 143 34.3
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 1.3e-07 61.6 85 37.6
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 1.7e-07 61.2 93 35.5
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 1.7e-07 61.2 151 31.8
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 2.2e-07 60.8 80 40.0
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 2.9e-07 60.5 145 34.5
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 2.9e-07 60.5 145 34.5
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 2.9e-07 60.5 145 33.1
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 2.9e-07 60.5 139 33.8
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 2.9e-07 60.5 77 40.3
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 3.8e-07 60.1 60 45.0
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 3.8e-07 60.1 75 41.3
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 4.9e-07 59.7 79 40.5
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 4.9e-07 59.7 88 42.0
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.1e-06 58.5 158 29.7
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 1.4e-06 58.2 79 39.2
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 1.4e-06 58.2 74 43.2
Actinidia28462 Actinidia chinensis HOM05D007469 ORTHO05D003360 2.4e-06 57.4 50 62.0
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 2.4e-06 57.4 81 35.8
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 3.2e-06 57.0 140 32.9
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 3.2e-06 57.0 140 32.9
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 3.2e-06 57.0 86 37.2
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 3.2e-06 57.0 146 32.2
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 4.2e-06 56.6 79 36.7
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 5.4e-06 56.2 79 36.7
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 7.1e-06 55.8 74 39.2
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 7.1e-06 55.8 81 39.5
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 7.1e-06 55.8 158 30.4
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 7.1e-06 55.8 69 40.6
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 9.3e-06 55.5 85 35.3


User provided reference genes

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