Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 9.1e-154 547.0 298 100.0
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.3e-104 383.6 279 78.9
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.9e-87 326.6 314 64.6
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 4.1e-85 318.9 314 64.0
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.6e-81 307.0 281 66.2
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.9e-81 304.7 293 61.1
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 3.2e-74 282.7 173 83.2
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 1.6e-73 280.4 300 58.7
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 3.0e-72 276.2 287 58.5
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 2.0e-71 273.5 265 65.7
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 3.9e-64 249.2 168 78.6
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 8.2e-62 241.5 304 56.2
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 5.3e-61 238.8 282 56.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 9.1e-61 238.0 168 76.2
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.6e-60 237.3 169 72.2
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.6e-60 237.3 317 52.1
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 3.5e-60 236.1 299 54.5
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 1.3e-59 234.2 299 52.2
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 2.2e-59 233.4 176 72.2
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 3.8e-59 232.6 178 71.3
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 3.8e-59 232.6 181 71.3
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.5e-58 230.7 307 52.8
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.5e-58 230.7 304 53.6
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.9e-58 230.3 176 71.6
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 1.9e-58 230.3 313 53.0
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.9e-58 230.3 160 76.9
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 7.2e-58 228.4 229 60.3
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 9.4e-58 228.0 290 52.8
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 1.2e-57 227.6 165 73.9
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.6e-57 227.3 186 67.2
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.1e-57 226.9 176 70.5
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 2.7e-57 226.5 174 71.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 6.1e-57 225.3 164 73.8
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 8.0e-57 224.9 270 51.9
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 1.0e-56 224.6 316 50.3
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 1.8e-56 223.8 307 52.4
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.8e-56 223.8 302 50.7
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.3e-56 223.4 311 48.2
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 2.3e-56 223.4 160 76.2
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 3.0e-56 223.0 315 51.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 4.0e-56 222.6 175 69.1
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.0e-56 222.6 170 68.8
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.2e-56 222.2 309 51.8
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.2e-56 222.2 182 68.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.1e-55 221.1 302 52.6
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.1e-55 221.1 173 69.9
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.6e-55 219.9 170 68.2
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.6e-55 219.9 160 74.4
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.6e-55 219.9 306 52.9
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 2.6e-55 219.9 282 53.9
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.3e-55 219.5 183 65.6
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 3.3e-55 219.5 306 52.3
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 4.4e-55 219.2 174 69.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 5.7e-55 218.8 160 71.2
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.3e-54 217.6 181 65.7
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.3e-54 217.6 181 65.7
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 1.3e-54 217.6 164 72.0
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.7e-54 217.2 164 71.3
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.2e-54 216.9 159 73.0
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.2e-54 216.9 297 51.9
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 2.8e-54 216.5 176 67.6
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 2.8e-54 216.5 318 46.9
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 3.7e-54 216.1 159 69.8
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 3.7e-54 216.1 161 70.8
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 6.3e-54 215.3 174 68.4
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 6.3e-54 215.3 297 53.9
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.1e-53 214.5 319 50.5
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.4e-53 214.2 333 46.5
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.8e-53 213.8 175 68.0
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.8e-53 213.8 160 71.9
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 2.4e-53 213.4 178 65.7
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 2.4e-53 213.4 178 65.7
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 2.4e-53 213.4 178 65.7
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.1e-53 212.6 289 48.4
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 4.1e-53 212.6 161 69.6
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 4.1e-53 212.6 178 66.9
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 5.3e-53 212.2 317 46.4
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.7e-52 209.9 146 74.7
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.7e-52 209.9 146 74.7
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 5.9e-52 208.8 338 47.9
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.0e-51 208.0 159 69.2
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.0e-51 208.0 351 45.6
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 8.5e-51 204.9 302 50.7
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-50 204.5 159 71.1
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.1e-50 204.5 284 51.1
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.5e-50 204.1 202 60.4
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 4.2e-50 202.6 278 49.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 2.7e-49 199.9 174 65.5
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 3.6e-49 199.5 147 70.7
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.8e-48 197.2 296 49.7
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.0e-48 196.1 157 69.4
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 8.8e-48 194.9 163 65.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.3e-46 191.0 183 58.5
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 5.9e-44 182.2 159 62.3
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.0e-43 181.4 203 54.7
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 5.0e-43 179.1 181 57.5
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.9e-42 177.2 177 58.2
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 4.2e-42 176.0 268 48.1
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 5.5e-42 175.6 266 49.6
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 4.7e-41 172.6 142 65.5
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 6.1e-41 172.2 159 61.6
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 4.0e-40 169.5 164 57.3
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 2.8e-38 163.3 127 69.3
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.7e-38 162.9 181 53.6
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 3.7e-38 162.9 106 79.2
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 2.3e-32 143.7 123 65.0
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.6e-31 140.2 136 61.8
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 3.7e-30 136.3 124 62.1
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-28 131.3 104 68.3
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.7e-27 127.5 240 42.1
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 4.0e-24 116.3 160 42.5
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 5.8e-23 112.5 173 39.3
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.2e-20 104.8 64 84.4
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 7.8e-20 102.1 149 45.0
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.1e-18 98.2 71 74.6
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-17 94.4 147 44.9
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.1e-13 81.6 177 44.6
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 3.0e-11 73.6 75 58.7
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 6.6e-11 72.4 99 52.5
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 1.1e-10 71.6 52 67.3
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 4.7e-09 66.2 165 38.8
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 2.3e-08 63.9 60 55.0
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.1e-08 63.5 40 77.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 5.2e-08 62.8 79 48.1
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 5.2e-08 62.8 49 69.4
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 2.0e-07 60.8 43 72.1


User provided reference genes

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