Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.7e-296 1021.9 517 100.0
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 5.8e-273 943.7 520 92.1
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.7e-264 915.6 521 88.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-255 885.9 518 85.3
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 3.4e-249 864.8 519 84.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 3.4e-249 864.8 519 84.0
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.2e-247 858.2 518 83.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.7e-246 855.1 464 89.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.7e-246 855.1 500 85.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 5.7e-244 847.4 514 83.1
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.6e-233 812.8 512 78.5
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.2e-232 808.9 466 83.7
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.2e-231 804.7 471 81.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.2e-231 804.7 476 81.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 9.4e-231 803.5 467 82.0
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.2e-230 803.1 463 83.8
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-230 803.1 513 77.6
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.7e-230 802.0 513 78.6
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 4.7e-230 801.2 499 79.2
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.0e-229 800.0 487 79.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.3e-229 798.9 517 77.6
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.3e-229 798.9 499 78.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.3e-229 798.9 460 83.0
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.0e-229 798.5 461 83.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.0e-229 798.5 517 76.8
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 4.0e-229 798.1 459 83.4
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-228 796.6 459 83.0
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.5e-228 796.2 510 77.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.6e-228 795.4 462 82.7
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.6e-228 795.4 518 76.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.6e-228 795.4 518 77.0
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.3e-227 793.1 514 76.5
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.3e-227 793.1 486 78.8
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.7e-227 792.7 462 83.1
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.2e-227 792.3 474 81.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.8e-227 792.0 518 76.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.8e-227 792.0 510 77.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.8e-227 791.2 474 81.2
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.4e-226 789.6 521 76.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.3e-226 787.7 464 81.5
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 7.0e-226 787.3 526 75.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.2e-225 786.6 513 76.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.7e-225 785.4 465 80.9
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.7e-225 785.4 515 77.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 5.9e-225 784.3 471 79.8
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 7.7e-225 783.9 459 80.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 7.7e-225 783.9 491 77.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 7.7e-225 783.9 512 75.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.0e-224 783.5 550 73.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.7e-224 782.7 512 75.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.2e-224 782.3 551 73.0
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 3.8e-224 781.6 466 80.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 5.0e-224 781.2 490 77.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 6.5e-224 780.8 459 80.2
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 6.5e-224 780.8 459 80.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.1e-223 780.0 523 74.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.5e-223 779.6 529 74.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-223 779.2 552 72.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.5e-223 778.9 535 74.4
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 4.2e-223 778.1 521 73.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 5.5e-223 777.7 495 78.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 459 81.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-222 775.8 459 81.3
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.1e-222 775.8 509 76.2
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.7e-222 774.6 471 78.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.4e-221 773.1 460 79.8
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.4e-221 773.1 466 79.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.4e-221 773.1 477 77.8
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.3e-221 772.3 523 74.4
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.3e-221 772.3 521 75.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 6.8e-221 770.8 499 76.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.5e-220 769.6 459 81.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.4e-220 768.1 513 73.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 9.8e-220 766.9 469 78.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.8e-219 765.4 460 80.4
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.7e-219 765.0 531 73.3
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 2.4e-218 762.3 487 74.3
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.4e-218 762.3 462 79.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 7.0e-218 760.8 461 79.4
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.9e-217 757.7 497 74.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 5.5e-215 751.1 504 72.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.8e-214 748.8 504 72.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.6e-214 748.4 503 72.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 3.6e-214 748.4 504 71.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.7e-214 748.0 504 72.0
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.8e-213 746.1 504 71.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.8e-213 746.1 504 72.0
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.3e-213 745.7 459 77.6
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.0e-213 745.3 464 75.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.0e-213 745.3 459 78.9
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.5e-212 743.0 505 71.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.0e-212 742.7 495 73.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 4.9e-211 738.0 564 68.3
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.1e-210 736.9 522 72.2
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.4e-210 736.5 504 71.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.4e-210 735.7 496 71.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 7.0e-210 734.2 572 65.9
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.5e-209 731.9 482 74.7
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 4.5e-209 731.5 505 70.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 7.8e-209 730.7 481 74.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 2.1e-206 722.6 515 69.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.7e-206 721.5 521 68.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 8.9e-205 717.2 469 75.7
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.5e-204 716.5 458 73.1
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.0e-200 703.7 456 73.2
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.1e-199 700.3 375 90.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.6e-198 696.4 464 71.8
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.7e-198 694.9 419 78.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.0e-196 689.5 416 79.8
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 9.8e-196 687.2 511 66.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.4e-195 684.5 461 73.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.4e-194 682.6 459 72.1
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.0e-193 679.5 510 67.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.9e-192 675.2 445 74.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 5.0e-192 674.9 375 86.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.2e-190 670.2 382 85.3
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.2e-188 663.7 385 83.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.4e-188 661.8 514 67.3
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.3e-187 660.2 385 83.1
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.1e-181 640.6 453 65.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.9e-179 632.5 473 66.8
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-178 630.2 453 67.8
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 5.4e-178 628.2 714 49.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 7.8e-177 624.4 400 78.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.7e-168 596.7 462 65.4
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 6.6e-168 594.7 470 63.6
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.8e-166 589.3 453 64.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 8.4e-163 577.8 365 79.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-151 540.8 392 70.7
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.0e-115 419.1 360 62.5
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.7e-113 413.3 315 68.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 5.2e-112 409.1 237 82.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.4e-101 374.4 292 63.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-94 351.3 256 69.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.3e-94 351.3 452 40.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.3e-90 336.3 460 38.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.0e-88 329.7 202 77.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 6.8e-88 328.9 456 38.4
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 6.0e-76 289.3 225 64.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 6.6e-67 259.2 172 75.0
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.2e-65 255.0 400 41.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 4.4e-63 246.5 135 87.4
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 3.8e-54 216.9 187 62.0
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 5.4e-53 213.0 180 62.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-50 205.3 196 54.6
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 4.0e-48 196.8 139 71.2
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 6.0e-44 183.0 131 63.4
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.8e-43 181.4 121 67.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.9e-43 180.3 249 42.6
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.7e-43 179.5 98 86.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.4e-40 171.0 372 30.9
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 4.0e-40 170.2 90 88.9
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-32 145.6 124 58.1
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.0e-30 139.0 80 80.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-29 134.8 93 72.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.6e-28 131.7 100 68.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.1e-28 131.3 74 83.8
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 7.9e-28 129.4 290 31.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 7.9e-28 129.4 100 66.0
TPR.G20506 Trifolium pratense HOM05D004194 ORTHO05D412119 5.9e-23 113.2 65 95.4
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-14 84.7 55 63.6
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.5e-13 81.3 47 76.6
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 3.2e-13 80.9 43 79.1
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.0e-11 75.9 41 80.5
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.2e-09 68.2 35 85.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.7e-09 67.4 111 42.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 4.1e-08 63.9 38 78.9
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 7.0e-08 63.2 34 82.4
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 7.7e-07 59.7 290 25.2


User provided reference genes

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