Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 3.3e-30 135.2 120 100.0
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.3e-26 123.2 120 87.5
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 7.2e-25 117.5 68 88.2
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 9.4e-25 117.1 68 89.7
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 2.0e-22 109.4 68 79.4
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 2.0e-22 109.4 68 79.4
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 9.7e-22 107.1 68 75.0
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 2.2e-21 105.9 68 77.9
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 6.3e-21 104.4 68 77.9
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 1.4e-20 103.2 68 72.1
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 2.0e-19 99.4 120 80.8
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 4.5e-19 98.2 68 73.5
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 4.5e-19 98.2 68 73.5
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 7.7e-19 97.4 68 72.1
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 69.1
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 1.3e-18 96.7 68 72.1
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 1.3e-18 96.7 68 70.6
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 1.7e-18 96.3 68 67.6
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 2.2e-18 95.9 68 67.6
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 2.2e-18 95.9 68 69.1
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 2.9e-18 95.5 68 70.6
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 3.8e-18 95.1 68 67.6
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 5.0e-18 94.7 68 69.1
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 5.0e-18 94.7 68 66.2
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 6.5e-18 94.4 67 68.7
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 6.5e-18 94.4 67 68.7
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 8.5e-18 94.0 68 72.1
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 8.5e-18 94.0 68 70.6
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.1e-17 93.6 68 70.6
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 1.1e-17 93.6 68 72.1
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 1.1e-17 93.6 68 67.6
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 67.6
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 67.6
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 67.6
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.5e-17 93.2 120 79.2
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 1.9e-17 92.8 68 67.6
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.9e-17 92.8 67 67.2
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.9e-17 92.8 67 67.2
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.9e-17 92.8 67 67.2
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.9e-17 92.8 67 67.2
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.5e-17 92.4 68 69.1
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.5e-17 92.4 68 66.2
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.2e-17 92.0 67 70.1
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.2e-17 92.0 67 70.1
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 3.2e-17 92.0 68 67.6
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 3.2e-17 92.0 67 70.1
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 3.2e-17 92.0 68 69.1
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 3.2e-17 92.0 68 67.6
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 4.2e-17 91.7 68 67.6
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 4.2e-17 91.7 68 66.2
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 4.2e-17 91.7 68 67.6
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 4.2e-17 91.7 68 64.7
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 5.5e-17 91.3 119 79.8
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 7.2e-17 90.9 66 66.7
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 7.2e-17 90.9 65 67.7
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 7.2e-17 90.9 65 67.7
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 7.2e-17 90.9 67 65.7
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 7.2e-17 90.9 68 67.6
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 7.2e-17 90.9 68 63.2
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 9.4e-17 90.5 120 67.5
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 9.4e-17 90.5 68 67.6
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 9.4e-17 90.5 68 64.7
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 9.4e-17 90.5 65 67.7
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.2e-16 90.1 68 66.2
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 1.2e-16 90.1 68 64.7
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.2e-16 90.1 120 80.8
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 1.6e-16 89.7 62 72.6
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 1.6e-16 89.7 68 67.6
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 64.7
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 2.1e-16 89.4 67 67.2
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 66.2
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 66.2
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 66.2
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 66.2
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 66.2
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 66.2
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 2.1e-16 89.4 68 67.6
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 3.6e-16 88.6 120 75.0
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 3.6e-16 88.6 65 66.2
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.6e-16 88.6 67 67.2
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 3.6e-16 88.6 69 69.6
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 3.6e-16 88.6 120 80.0
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 4.7e-16 88.2 65 64.6
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 4.7e-16 88.2 65 64.6
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 4.7e-16 88.2 68 63.2
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 4.7e-16 88.2 68 61.8
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 6.1e-16 87.8 68 61.8
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 6.1e-16 87.8 68 64.7
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 6.1e-16 87.8 68 66.2
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 8.0e-16 87.4 67 64.2
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 8.0e-16 87.4 68 63.2
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 8.0e-16 87.4 68 63.2
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 8.0e-16 87.4 68 66.2
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 8.0e-16 87.4 68 64.7
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.0e-15 87.0 120 73.3
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 1.0e-15 87.0 67 62.7
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.0e-15 87.0 66 69.7
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 1.0e-15 87.0 68 63.2
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.0e-15 87.0 68 60.3
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.4e-15 86.7 68 63.2
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 1.4e-15 86.7 68 67.6
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 1.8e-15 86.3 68 60.3
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.8e-15 86.3 68 61.8
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.8e-15 86.3 68 61.8
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 1.8e-15 86.3 68 61.8
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 1.8e-15 86.3 68 58.8
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 2.3e-15 85.9 65 64.6
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.3e-15 85.9 68 63.2
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.3e-15 85.9 68 63.2
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 2.3e-15 85.9 68 63.2
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 2.3e-15 85.9 68 64.7
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 2.3e-15 85.9 68 57.4
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.3e-15 85.9 67 62.7
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 3.0e-15 85.5 64 65.6
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.0e-15 85.5 120 72.5
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 3.0e-15 85.5 68 63.2
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 4.0e-15 85.1 68 63.2
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 4.0e-15 85.1 68 61.8
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 4.0e-15 85.1 68 63.2
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 4.0e-15 85.1 68 58.8
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 5.2e-15 84.7 120 73.3
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 5.2e-15 84.7 120 71.7
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 6.8e-15 84.3 61 67.2
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 6.8e-15 84.3 68 64.7
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 8.8e-15 84.0 68 63.2
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 8.8e-15 84.0 120 68.3
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 8.8e-15 84.0 69 65.2
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.2e-14 83.6 69 62.3
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 1.2e-14 83.6 69 63.8
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 62.7
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 61.2
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 1.5e-14 83.2 68 55.9
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 2.0e-14 82.8 68 61.8
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.4e-14 82.0 120 71.7
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 3.4e-14 82.0 68 60.3
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.4e-14 82.0 60 65.0
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 4.4e-14 81.6 121 76.9
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 5.7e-14 81.3 67 61.2
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 5.7e-14 81.3 120 70.8
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 1.3e-13 80.1 120 65.8
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 4.8e-13 78.2 65 58.5
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 1.4e-12 76.6 68 60.3
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 5.9e-11 71.2 68 52.9
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 7.7e-11 70.9 64 53.1
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.0e-10 70.5 70 52.9
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.3e-10 69.3 70 50.0
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 8.6e-10 67.4 46 69.6
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 4.2e-09 65.1 50 68.0
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 7.2e-09 64.3 53 62.3
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 2.8e-08 62.4 70 40.0
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 8.0e-08 60.8 49 61.2
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 6.8e-07 57.8 42 59.5
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 1.2e-06 57.0 68 41.2
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 3.4e-06 55.5 42 59.5


User provided reference genes

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