Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.7e-174 615.9 316 100.0
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 1.3e-137 493.4 293 85.3
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 3.5e-127 458.8 287 80.5
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 2.3e-126 456.1 287 80.1
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.2e-125 451.8 287 80.1
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 4.7e-116 421.8 293 75.1
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.9e-112 409.8 291 72.5
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.3e-110 403.7 283 73.5
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 3.3e-109 399.1 305 69.2
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 2.1e-108 396.4 300 70.0
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 7.3e-93 344.7 248 68.5
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.1e-91 340.9 287 59.2
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.3e-89 334.0 244 65.6
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.2e-89 333.2 290 59.0
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 3.9e-86 322.4 248 62.5
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 5.1e-86 322.0 278 58.3
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.1e-86 322.0 251 63.7
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 1.1e-85 320.9 271 61.6
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.3e-85 319.3 261 60.5
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 4.3e-85 318.9 225 68.0
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.3e-84 317.4 290 57.2
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.6e-84 317.0 271 61.3
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.6e-84 317.0 240 63.8
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 2.1e-84 316.6 262 59.2
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 3.6e-84 315.8 270 58.5
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 3.6e-84 315.8 241 64.7
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.8e-84 315.5 255 58.8
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 8.1e-84 314.7 247 61.1
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.1e-83 314.3 263 58.6
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 2.4e-83 313.2 287 55.4
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 5.3e-83 312.0 230 71.7
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 6.9e-83 311.6 268 58.2
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.0e-82 310.1 273 57.5
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 2.0e-82 310.1 273 57.5
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 3.4e-82 309.3 276 58.0
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 3.4e-82 309.3 242 62.8
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.2e-81 306.6 246 61.4
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 3.8e-81 305.8 246 61.0
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 4.9e-81 305.4 273 57.5
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 6.4e-81 305.1 243 61.3
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 6.4e-81 305.1 280 55.4
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.4e-80 303.9 273 56.8
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 3.2e-80 302.8 258 57.8
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 5.4e-80 302.0 266 55.3
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 7.1e-80 301.6 288 54.2
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 9.3e-80 301.2 270 58.1
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 1.2e-79 300.8 268 57.1
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.2e-79 300.8 256 57.8
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-79 300.8 256 57.8
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-79 300.4 256 57.8
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-79 300.1 262 57.3
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 2.1e-79 300.1 260 55.8
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 2.7e-79 299.7 285 51.9
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 2.7e-79 299.7 248 59.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.3e-78 297.4 292 52.4
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.7e-78 297.0 257 56.0
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.7e-78 297.0 256 57.4
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 2.3e-78 296.6 304 52.3
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 3.0e-78 296.2 239 60.7
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.9e-78 295.8 256 57.0
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 5.1e-78 295.4 247 60.3
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 5.1e-78 295.4 292 52.4
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.5e-77 293.1 256 56.6
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 7.3e-77 291.6 248 58.9
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 7.3e-77 291.6 273 54.9
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.3e-76 290.8 284 55.6
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.1e-76 290.0 263 58.2
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.1e-76 290.0 289 52.6
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 6.2e-76 288.5 261 56.7
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 8.1e-76 288.1 285 52.3
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 8.1e-76 288.1 272 54.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 8.1e-76 288.1 272 54.0
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 8.1e-76 288.1 287 54.0
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.1e-75 287.7 260 56.5
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.4e-75 287.3 270 53.7
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 1.8e-75 287.0 250 58.4
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.8e-75 287.0 272 53.7
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.2e-74 284.3 249 57.0
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 2.0e-74 283.5 288 53.8
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 2.6e-74 283.1 275 53.8
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 3.4e-74 282.7 275 53.8
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 3.4e-74 282.7 275 53.8
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 3.4e-74 282.7 275 53.8
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 3.4e-74 282.7 275 53.8
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 9.9e-74 281.2 247 56.3
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 2.9e-73 279.6 244 57.0
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 4.2e-72 275.8 232 62.1
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.2e-71 274.2 304 49.3
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.9e-70 269.2 253 55.3
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.3e-68 264.2 247 52.2
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 5.3e-67 258.8 235 53.2
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.2e-66 257.7 249 51.8
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.5e-66 255.8 239 52.7
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.5e-65 251.9 245 52.7
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 2.5e-64 250.0 232 53.4
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 5.5e-64 248.8 282 47.5
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 4.6e-63 245.7 263 49.4
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.0e-62 244.6 237 55.7
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 6.2e-60 235.3 203 57.1
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 2.2e-57 226.9 225 53.3
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.2e-56 222.6 254 49.2
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.3e-52 211.1 252 46.4
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 2.8e-52 209.9 307 41.7
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.5e-45 186.8 242 43.0
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 3.7e-44 183.0 275 39.3
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 3.1e-43 179.9 187 49.2
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 3.0e-38 163.3 115 69.6
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 7.4e-37 158.7 238 38.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 5.9e-34 149.1 238 35.3
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.6e-31 139.8 106 67.0
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 4.7e-31 139.4 256 34.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.0e-30 136.7 252 36.1
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 2.8e-28 130.2 84 77.4
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.8e-27 127.5 101 56.4
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.8e-27 127.5 101 56.4
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-25 121.7 168 39.3
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.7e-25 120.9 167 38.9
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.9e-24 117.5 145 43.4
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 6.1e-23 112.5 231 34.2
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 4.4e-21 106.3 277 29.2
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 4.4e-21 106.3 289 29.4
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 4.4e-21 106.3 155 42.6
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 1.1e-19 101.7 248 30.2
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 6.1e-15 85.9 74 56.8
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.5e-13 79.0 103 39.8
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 5.4e-11 72.8 39 82.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 9.1e-11 72.0 65 50.8
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 7.7e-10 68.9 64 51.6
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.3e-08 63.5 56 50.0
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 4.2e-08 63.2 44 63.6


User provided reference genes

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