Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G582 Trifolium pratense HOM05D002270 ORTHO05D002866 2.4e-96 355.5 183 100.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 2.1e-76 289.3 183 82.5
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 1.3e-70 270.0 183 78.1
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 6.6e-70 267.7 183 78.1
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 7.3e-61 237.7 182 71.4
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 4.6e-55 218.4 178 66.3
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.0e-54 217.2 183 62.8
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 6.6e-54 214.5 179 65.9
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 5.2e-51 204.9 182 62.6
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 9.9e-50 200.7 177 62.1
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.9e-48 196.4 182 62.1
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 9.2e-48 194.1 177 61.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 4.3e-37 158.7 175 50.3
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 1.6e-36 156.8 175 49.7
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 2.4e-35 152.9 177 52.0
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 5.8e-34 148.3 175 46.9
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 7.6e-34 147.9 175 46.9
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.9e-34 147.5 183 47.5
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.7e-33 146.7 170 51.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 2.2e-33 146.4 175 46.9
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.1e-32 144.1 183 44.8
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.1e-32 144.1 175 50.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.1e-32 144.1 180 47.2
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.1e-32 144.1 180 47.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.1e-32 144.1 179 48.6
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.1e-32 144.1 183 47.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 1.4e-32 143.7 179 45.3
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.4e-32 142.9 172 48.8
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 3.2e-32 142.5 175 49.7
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 4.2e-32 142.1 175 49.1
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 9.3e-32 141.0 173 48.6
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.2e-31 140.6 177 46.9
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.6e-31 140.2 175 49.7
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.7e-31 139.4 175 49.7
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 3.5e-31 139.0 174 46.0
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.5e-31 139.0 175 49.1
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 3.5e-31 139.0 175 46.3
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 4.6e-31 138.7 175 46.9
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 4.6e-31 138.7 177 46.9
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.9e-31 137.9 148 52.7
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 7.9e-31 137.9 182 48.4
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.0e-30 137.5 177 44.6
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 1.3e-30 137.1 173 46.8
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.3e-30 137.1 187 44.9
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.8e-30 136.7 175 48.0
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 2.3e-30 136.3 173 46.8
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.3e-30 136.3 174 42.5
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 3.0e-30 136.0 176 47.7
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.0e-30 136.0 174 47.7
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.9e-30 135.6 179 43.0
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 3.9e-30 135.6 179 46.9
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 8.7e-30 134.4 176 47.2
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 8.7e-30 134.4 173 46.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 8.7e-30 134.4 183 44.3
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 8.7e-30 134.4 123 56.1
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 1.1e-29 134.0 174 42.0
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.1e-29 134.0 173 47.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.5e-29 133.7 178 47.2
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.5e-29 133.7 178 45.5
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.5e-29 133.7 178 47.2
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.5e-29 132.9 176 42.0
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.5e-29 132.9 186 43.5
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 4.3e-29 132.1 175 44.6
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 7.4e-29 131.3 173 47.4
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 7.4e-29 131.3 182 47.3
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 9.6e-29 131.0 179 45.3
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.6e-28 130.2 191 45.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 2.1e-28 129.8 166 44.0
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 2.8e-28 129.4 118 56.8
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 2.8e-28 129.4 175 45.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.7e-28 129.0 179 44.1
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 3.7e-28 129.0 184 44.6
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 6.2e-28 128.3 181 45.9
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 8.1e-28 127.9 116 56.9
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.4e-26 122.5 117 53.8
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.4e-26 122.5 122 52.5
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 5.8e-26 121.7 182 42.3
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.9e-25 119.4 173 44.5
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.1e-24 117.5 132 53.0
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.4e-24 117.1 85 67.1
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.7e-23 112.8 162 45.7
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.7e-23 112.8 182 42.9
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 4.6e-23 112.1 70 75.7
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 7.9e-23 111.3 123 50.4
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.8e-22 110.2 177 41.2
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.8e-22 110.2 192 40.1
Aqoxy6G02932 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.9e-22 109.0 92 60.9
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.9e-22 109.0 182 39.0
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 5.1e-22 108.6 177 41.8
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 8.7e-22 107.8 195 38.5
PGSC0003DMG400044228 Solanum tuberosum HOM05D002270 ORTHO05D002866 8.7e-22 107.8 147 44.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 1.1e-21 107.5 195 38.5
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.5e-21 106.3 79 65.8
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 4.3e-21 105.5 192 38.5
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 4.3e-21 105.5 79 65.8
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 5.6e-21 105.1 192 38.0
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 7.4e-21 104.8 192 39.6
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 7.4e-21 104.8 79 63.3
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.3e-20 104.0 204 40.7
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 1.6e-20 103.6 160 43.1
BcaC07g41079 Brassica carinata HOM05D002270 ORTHO05D002866 2.1e-20 103.2 77 67.5
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.1e-20 103.2 195 38.5
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.8e-20 102.8 192 38.5
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 6.2e-20 101.7 192 38.0
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 4.0e-19 99.0 129 45.0
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 5.3e-19 98.6 180 40.0
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 1.2e-18 97.4 183 39.9
SEGI_09123 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-18 97.1 70 62.9
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-18 97.1 70 62.9
SEGI_29020 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-18 97.1 70 62.9
SMO141G0258 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.6e-18 96.3 70 62.9
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 3.4e-18 95.9 183 38.3
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.7e-17 93.6 189 37.6
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 3.2e-16 89.4 194 34.5
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 5.5e-16 88.6 190 34.2
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.0e-14 84.3 64 64.1
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.9e-14 82.4 182 36.3
MCO14G006 Micromonas commoda HOM05D002270 ORTHO05D002866 1.1e-13 80.9 56 67.9
TAR636G2258 Trochodendron aralioides HOM05D002270 ORTHO05D002866 5.3e-11 72.0 44 75.0
VMungo1080G1592 Vigna mungo HOM05D002270 ORTHO05D002866 6.5e-09 65.1 44 68.2


User provided reference genes

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