Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 5.2e-54 214.2 111 100.0
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.5e-37 159.5 84 100.0
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.9e-36 155.2 84 97.6
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.9e-36 155.2 84 97.6
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.4e-35 152.9 84 94.0
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 5.4e-35 151.0 84 94.0
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 9.3e-35 150.2 93 82.8
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.2e-34 149.8 84 91.7
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.6e-34 149.4 84 91.7
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.1e-34 149.1 83 91.6
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 2.1e-34 149.1 84 91.7
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 3.5e-34 148.3 84 91.7
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 4.6e-34 147.9 84 91.7
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 1.0e-33 146.7 84 90.5
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.0e-33 146.7 84 91.7
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.3e-33 146.4 81 91.4
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.8e-33 146.0 84 88.1
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 2.3e-33 145.6 84 88.1
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 3.0e-33 145.2 84 88.1
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 5.1e-33 144.4 81 91.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 6.7e-33 144.1 84 90.5
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.5e-32 142.9 89 85.4
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.9e-32 142.5 81 92.6
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 3.3e-32 141.7 83 88.0
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 3.3e-32 141.7 83 88.0
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.3e-32 141.7 84 86.9
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 5.6e-32 141.0 84 88.1
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.6e-32 141.0 84 88.1
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 5.6e-32 141.0 94 79.8
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 5.6e-32 141.0 84 86.9
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 7.4e-32 140.6 84 85.7
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 7.4e-32 140.6 84 86.9
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 9.6e-32 140.2 77 93.5
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.3e-31 139.8 84 83.3
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.3e-31 139.8 84 83.3
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.3e-31 139.8 84 83.3
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.6e-31 139.4 84 86.9
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.6e-31 139.4 84 86.9
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 1.6e-31 139.4 81 87.7
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.1e-31 139.0 81 87.7
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 2.1e-31 139.0 81 87.7
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.8e-31 138.7 84 85.7
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 2.8e-31 138.7 84 86.9
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.7e-31 138.3 94 78.7
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.7e-31 138.3 77 92.2
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 4.8e-31 137.9 84 85.7
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.8e-31 137.9 84 85.7
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.8e-31 137.9 84 85.7
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.8e-31 137.9 84 85.7
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.8e-31 137.9 84 85.7
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 4.8e-31 137.9 84 82.1
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 8.1e-31 137.1 84 83.3
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.1e-30 136.7 84 84.5
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.1e-30 136.7 84 84.5
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.4e-30 136.3 84 85.7
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.8e-30 136.0 84 83.3
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.8e-30 136.0 80 87.5
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.8e-30 136.0 84 82.1
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.4e-30 135.6 84 82.1
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 2.4e-30 135.6 84 84.5
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 2.4e-30 135.6 84 85.7
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.4e-30 135.6 84 85.7
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 5.3e-30 134.4 81 85.2
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.3e-30 134.4 81 85.2
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-30 133.7 84 81.0
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-30 133.7 84 81.0
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-30 133.7 84 81.0
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-30 133.7 84 81.0
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.2e-29 133.3 124 63.7
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.2e-29 133.3 86 83.7
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.2e-29 133.3 84 82.1
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-29 133.3 81 84.0
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.5e-29 132.9 77 85.7
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 2.0e-29 132.5 84 82.1
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.6e-29 132.1 86 84.9
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.6e-29 132.1 84 82.1
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.6e-29 132.1 81 82.7
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 2.6e-29 132.1 84 82.1
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 3.4e-29 131.7 84 83.3
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.4e-29 131.7 94 74.5
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 4.5e-29 131.3 84 79.8
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 9.9e-29 130.2 84 81.0
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 9.9e-29 130.2 81 82.7
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.7e-28 129.4 84 79.8
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 2.2e-28 129.0 84 82.1
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 2.2e-28 129.0 83 79.5
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 2.2e-28 129.0 84 79.8
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.9e-28 128.6 83 78.3
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 4.9e-28 127.9 81 82.7
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 2.4e-27 125.6 84 76.2
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.4e-27 125.6 142 54.9
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.2e-27 124.8 84 79.8
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 7.1e-27 124.0 84 73.8
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.2e-26 123.2 84 76.2
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 2.7e-26 122.1 84 75.0
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 3.5e-26 121.7 84 75.0
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 3.5e-26 121.7 84 75.0
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 4.6e-26 121.3 77 81.8
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 7.9e-26 120.6 84 75.0
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 7.9e-26 120.6 84 75.0
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 7.9e-26 120.6 84 75.0
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 7.9e-26 120.6 84 75.0
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 7.9e-26 120.6 84 75.0
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 7.9e-26 120.6 84 75.0
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.3e-25 119.8 83 74.7
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.3e-25 119.0 69 85.5
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 3.9e-25 118.2 84 73.8
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.9e-25 118.2 68 86.8
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 5.1e-25 117.9 81 76.5
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 2.5e-24 115.5 76 73.7
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.1e-23 112.5 63 92.1
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 2.1e-23 112.5 84 72.6
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.4e-22 109.0 69 75.4
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.3e-22 107.8 80 78.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 5.3e-22 107.8 68 83.8
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 5.3e-22 107.8 67 76.1
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.2e-21 106.7 98 61.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 3.4e-21 105.1 67 77.6
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 1.0e-20 103.6 70 75.7
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 2.9e-20 102.1 89 56.2
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 7.1e-19 97.4 50 98.0
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.3e-17 92.4 60 78.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.5e-16 89.7 85 55.3
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 3.3e-16 88.6 86 62.8
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 2.8e-15 85.5 51 80.4
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.1e-14 83.6 76 57.9
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.1e-14 83.6 66 69.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.1e-14 82.0 50 82.0
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.0e-13 79.3 50 80.0
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 3.8e-12 75.1 50 70.0
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 2.5e-11 72.4 83 55.4


User provided reference genes

Program Settings