Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5710 Trifolium pratense HOM05D003498 ORTHO05D004191 3.2e-33 144.4 70 100.0
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 3.7e-13 77.8 66 62.1
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 1.1e-12 76.3 47 78.7
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 1.8e-12 75.5 68 60.3
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 3.1e-12 74.7 61 65.6
Medtr0271s0030 Medicago truncatula HOM05D003498 ORTHO05D004191 5.3e-12 73.9 35 97.1
TPR.G16146 Trifolium pratense HOM05D003498 ORTHO05D004191 1.2e-11 72.8 35 97.1
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 1.6e-11 72.4 35 94.3
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 2.0e-11 72.0 64 59.4
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 2.6e-11 71.6 58 65.5
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 1.0e-10 69.7 58 63.8
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 1.0e-10 69.7 58 62.1
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 2.2e-10 68.6 58 62.1
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 2.2e-10 68.6 35 85.7
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 3.8e-10 67.8 58 56.9
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 5.0e-10 67.4 47 70.2
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 5.0e-10 67.4 47 70.2
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 6.5e-10 67.0 65 52.3
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 6.5e-10 67.0 65 52.3
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 6.5e-10 67.0 58 58.6
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 8.5e-10 66.6 70 52.9
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 8.5e-10 66.6 35 88.6
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 1.1e-09 66.2 47 68.1
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 1.5e-09 65.9 65 50.8
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 1.5e-09 65.9 59 57.6
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 1.5e-09 65.9 65 55.4
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 1.9e-09 65.5 61 54.1
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 1.9e-09 65.5 35 85.7
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 1.9e-09 65.5 35 85.7
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 1.9e-09 65.5 58 60.3
QL93p1517_0005 Quercus lobata HOM05D003498 ORTHO05D004191 1.9e-09 65.5 58 60.3
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 1.9e-09 65.5 58 56.9
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 3.2e-09 64.7 35 82.9
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 3.2e-09 64.7 66 53.0
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 3.2e-09 64.7 65 50.8
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 3.2e-09 64.7 58 53.4
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 3.2e-09 64.7 35 85.7
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 4.2e-09 64.3 58 56.9
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 4.2e-09 64.3 35 80.0
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 4.2e-09 64.3 35 80.0
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 4.2e-09 64.3 35 80.0
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 5.5e-09 63.9 58 55.2
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 5.5e-09 63.9 61 52.5
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 5.5e-09 63.9 46 67.4
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 5.5e-09 63.9 35 80.0
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 5.5e-09 63.9 35 80.0
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.2e-09 63.5 58 55.2
AUR62043688 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.2e-09 63.5 58 55.2
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 7.2e-09 63.5 70 45.7
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 7.2e-09 63.5 58 56.9
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 7.2e-09 63.5 47 59.6
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 7.2e-09 63.5 47 68.1
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 9.4e-09 63.2 51 58.8
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 9.4e-09 63.2 58 55.2
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 9.4e-09 63.2 35 80.0
Manes.06G007550 Manihot esculenta HOM05D003498 ORTHO05D004191 9.4e-09 63.2 58 55.2
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 9.4e-09 63.2 59 54.2
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 1.2e-08 62.8 47 61.7
AUR62040722 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.2e-08 62.8 58 55.2
AUR62044540 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.2e-08 62.8 58 55.2
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.2e-08 62.8 59 54.2
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 1.2e-08 62.8 62 51.6
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 1.6e-08 62.4 62 53.2
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 1.6e-08 62.4 62 54.8
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 1.6e-08 62.4 47 63.8
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 1.6e-08 62.4 61 49.2
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.1e-08 62.0 35 80.0
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.1e-08 62.0 58 55.2
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 2.1e-08 62.0 35 77.1
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 2.1e-08 62.0 58 56.9
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 2.1e-08 62.0 58 56.9
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 2.1e-08 62.0 58 56.9
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 2.1e-08 62.0 35 80.0
Zm00001eb208950 Zea mays HOM05D003498 ORTHO05D004191 2.1e-08 62.0 35 80.0
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 2.7e-08 61.6 47 59.6
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.7e-08 61.6 35 77.1
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 2.7e-08 61.6 58 58.6
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.7e-08 61.6 35 80.0
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 3.6e-08 61.2 58 56.9
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 3.6e-08 61.2 58 55.2
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 3.6e-08 61.2 37 75.7
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 3.6e-08 61.2 35 77.1
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 4.7e-08 60.8 35 74.3
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 4.7e-08 60.8 47 57.4
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 4.7e-08 60.8 58 55.2
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 4.7e-08 60.8 62 51.6
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 4.7e-08 60.8 61 50.8
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 4.7e-08 60.8 50 58.0
Zm00001eb248420 Zea mays HOM05D003498 ORTHO05D004191 4.7e-08 60.8 35 80.0
AUR62012625 Chenopodium quinoa HOM05D000022 ORTHO05D137949 6.1e-08 60.5 59 52.5
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 6.1e-08 60.5 35 77.1
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 6.1e-08 60.5 35 77.1
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 6.1e-08 60.5 35 77.1
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 8.0e-08 60.1 35 77.1
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 8.0e-08 60.1 47 57.4
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 8.0e-08 60.1 35 77.1
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 8.0e-08 60.1 65 49.2
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 1.0e-07 59.7 47 55.3
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 1.0e-07 59.7 35 80.0
AUR62012113 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.0e-07 59.7 58 51.7
Hma1.2p1_1219F.1_g267800 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 1.0e-07 59.7 35 74.3
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 1.0e-07 59.7 58 55.2
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 1.4e-07 59.3 65 50.8
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 77.1
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 77.1
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 77.1
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 77.1
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 77.1
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 80.0
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 80.0
PSO384G2342 Papaver somniferum HOM05D003498 ORTHO05D004191 1.4e-07 59.3 35 71.4
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 1.4e-07 59.3 58 53.4
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 1.8e-07 58.9 59 50.8
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 1.8e-07 58.9 47 55.3
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 1.8e-07 58.9 47 55.3
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 1.8e-07 58.9 65 50.8
Dinv27202 Davidia involucrata HOM05D003498 ORTHO05D004191 1.8e-07 58.9 48 58.3
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 1.8e-07 58.9 58 53.4
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 2.3e-07 58.5 47 55.3
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 3.0e-07 58.2 35 71.4
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 3.0e-07 58.2 47 55.3
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 3.0e-07 58.2 35 74.3
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 3.0e-07 58.2 47 61.7
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 4.0e-07 57.8 58 51.7
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 4.0e-07 57.8 47 61.7
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 4.0e-07 57.8 62 51.6
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 4.0e-07 57.8 47 59.6
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 6.7e-07 57.0 35 77.1
Dinv41748 Davidia involucrata HOM05D003498 ORTHO05D184261 6.7e-07 57.0 38 65.8
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 6.7e-07 57.0 58 51.7
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 6.7e-07 57.0 62 48.4
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 8.8e-07 56.6 59 47.5
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 8.8e-07 56.6 35 74.3
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 1.2e-06 56.2 50 54.0
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 1.5e-06 55.8 62 48.4
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 1.5e-06 55.8 62 48.4
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 1.5e-06 55.8 62 48.4
CDE09G0325 Ceratophyllum demersum HOM05D003498 ORTHO05D004191 2.0e-06 55.5 35 71.4
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 2.0e-06 55.5 58 51.7
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 2.6e-06 55.1 47 57.4
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 3.3e-06 54.7 70 40.0
HPP92_003500 Vanilla planifolia HOM05D003498 ORTHO05D004191 3.3e-06 54.7 35 62.9
HPP92_026896 Vanilla planifolia HOM05D003498 ORTHO05D004191 3.3e-06 54.7 35 62.9
Zm00001eb311360 Zea mays HOM05D003498 ORTHO05D004191 3.3e-06 54.7 33 75.8
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 4.4e-06 54.3 35 65.7
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 4.4e-06 54.3 47 57.4


User provided reference genes

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