Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5641 Trifolium pratense HOM05D003553 ORTHO05D005072 1.5e-101 372.9 183 100.0
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 1.2e-82 310.1 174 85.6
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 3.3e-77 292.0 174 82.2
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 3.0e-75 285.4 174 81.0
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 3.9e-70 268.5 178 76.4
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 5.0e-70 268.1 177 75.1
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 3.3e-69 265.4 175 76.6
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 3.3e-69 265.4 177 75.7
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 2.0e-66 256.1 178 70.8
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 2.6e-66 255.8 171 73.7
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 2.7e-63 245.7 178 68.5
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.8e-51 206.5 183 56.3
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 2.4e-51 206.1 183 56.3
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 1.2e-50 203.8 191 56.0
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 3.4e-50 202.2 183 55.2
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 5.8e-50 201.4 192 55.2
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 3.8e-49 198.7 195 53.8
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 8.4e-49 197.6 192 54.7
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 8.4e-49 197.6 195 51.8
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.4e-48 196.8 190 52.6
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 1.9e-48 196.4 195 52.3
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 3.2e-48 195.7 192 54.2
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 6.0e-47 191.4 187 52.4
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 1.7e-46 189.9 197 51.3
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 1.7e-46 189.9 191 53.4
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 2.3e-46 189.5 191 56.0
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 3.0e-46 189.1 185 53.5
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 1.5e-45 186.8 193 51.8
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 1.5e-45 186.8 192 52.1
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 2.5e-45 186.0 198 52.0
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 2.5e-45 186.0 181 53.0
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 4.3e-45 185.3 192 52.6
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 5.6e-45 184.9 191 52.4
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 5.6e-45 184.9 192 49.0
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 7.3e-45 184.5 192 52.6
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 7.3e-45 184.5 180 53.9
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.2e-44 183.7 190 53.7
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 2.1e-44 183.0 192 52.1
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 3.6e-44 182.2 191 53.4
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 3.6e-44 182.2 190 53.7
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 3.6e-44 182.2 190 53.7
TPR.G18770 Trifolium pratense HOM05D000974 ORTHO05D002201 3.6e-44 182.2 94 92.6
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 4.7e-44 181.8 196 53.1
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.1e-43 180.6 197 50.8
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-43 180.3 190 53.2
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 1.8e-43 179.9 226 46.9
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.8e-43 179.9 190 53.7
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 3.1e-43 179.1 190 53.2
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 4.0e-43 178.7 196 49.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 9.0e-43 177.6 192 50.5
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 1.2e-42 177.2 192 50.5
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.2e-42 177.2 192 50.5
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 1.2e-42 177.2 192 50.5
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.6e-42 176.0 192 50.0
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 3.4e-42 175.6 192 50.0
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 3.4e-42 175.6 188 51.1
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 5.8e-42 174.9 189 50.8
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 5.8e-42 174.9 182 52.2
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 9.9e-42 174.1 188 48.9
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 2.2e-41 172.9 188 51.6
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 2.2e-41 172.9 190 48.9
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 2.9e-41 172.6 188 52.7
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.9e-41 172.6 189 50.8
HPP92_007667 Vanilla planifolia HOM05D003553 ORTHO05D005072 3.8e-41 172.2 196 50.5
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 8.4e-41 171.0 194 49.5
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 8.4e-41 171.0 183 53.0
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 8.4e-41 171.0 194 49.0
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.1e-40 170.6 191 48.7
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.4e-40 170.2 189 48.7
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 1.4e-40 170.2 195 49.7
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 2.4e-40 169.5 190 50.5
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 5.4e-40 168.3 189 48.7
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 9.3e-40 167.5 196 48.5
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 9.3e-40 167.5 192 46.9
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 9.3e-40 167.5 191 49.7
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 9.3e-40 167.5 204 47.5
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 9.3e-40 167.5 197 47.7
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.6e-39 166.8 186 47.3
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 3.5e-39 165.6 186 47.8
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 4.6e-39 165.2 192 50.5
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 7.8e-39 164.5 187 49.2
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 7.8e-39 164.5 187 49.7
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-38 164.1 187 49.2
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 1.3e-38 163.7 187 49.2
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-38 163.3 191 48.2
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-38 163.3 188 48.9
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 1.7e-38 163.3 190 48.9
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 1.7e-38 163.3 190 48.9
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 1.7e-38 163.3 188 50.0
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.7e-38 163.3 165 53.3
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.3e-38 162.9 194 45.9
BcaNung05961 Brassica carinata HOM05D003553 ORTHO05D005072 2.3e-38 162.9 193 48.2
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 2.3e-38 162.9 189 48.7
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 2.3e-38 162.9 196 46.4
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.3e-38 162.9 187 49.7
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 3.0e-38 162.5 192 46.4
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 3.0e-38 162.5 190 48.9
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 3.0e-38 162.5 188 48.4
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 3.0e-38 162.5 188 48.4
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 3.0e-38 162.5 193 46.6
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 5.1e-38 161.8 186 48.9
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 5.1e-38 161.8 186 48.9
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 6.6e-38 161.4 187 46.0
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 8.7e-38 161.0 191 47.6
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 8.7e-38 161.0 190 48.9
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 8.7e-38 161.0 193 47.2
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 8.7e-38 161.0 193 47.2
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.1e-37 160.6 190 46.8
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 1.5e-37 160.2 186 48.9
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.5e-37 160.2 186 48.9
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 2.5e-37 159.5 191 47.1
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 2.5e-37 159.5 168 49.4
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 4.3e-37 158.7 191 47.1
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 3.6e-36 155.6 182 48.9
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 3.6e-36 155.6 194 46.4
MD14G1195500 Malus domestica HOM05D003553 ORTHO05D005072 3.6e-36 155.6 200 46.0
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 1.1e-35 154.1 181 45.3
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.4e-35 152.9 190 47.4
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 4.0e-35 152.1 199 46.2
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 7.6e-34 147.9 186 45.7
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 1.7e-33 146.7 122 59.8
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 1.7e-33 146.7 123 56.1
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 1.9e-32 143.3 196 41.8
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.3e-30 137.1 124 56.5
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.9e-29 133.3 123 57.7
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 3.3e-29 132.5 170 42.9
SEGI_10147 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 3.3e-29 132.5 207 39.1
SEGI_27806 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 3.3e-29 132.5 207 39.1
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 7.4e-29 131.3 156 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 2.4e-27 126.3 164 42.1
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 5.8e-26 121.7 170 40.6
CBR_g47969 Chara braunii HOM05D003553 ORTHO05D005072 5.5e-24 115.2 172 39.0
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 2.7e-23 112.8 84 64.3
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 3.5e-23 112.5 150 44.7
Aa31LG7G6930 Aethionema arabicum HOM05D003553 ORTHO05D005072 5.6e-21 105.1 131 43.5
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.1e-19 100.9 172 40.1
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 1.8e-19 100.1 166 36.7
Sc23g0004760 Simmondsia chinensis HOM05D003553 ORTHO05D005072 4.0e-19 99.0 84 57.1
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.4e-16 90.5 159 34.6
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.9e-16 90.1 96 49.0
Nn4g23587 Nelumbo nucifera HOM05D003438 ORTHO05D004235 2.7e-15 86.3 159 35.2
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 7.9e-15 84.7 95 50.5
Sc23g0004630 Simmondsia chinensis HOM05D003553 ORTHO05D005072 8.7e-14 81.3 69 58.0
Hma1.2p1_0762F.1_g214430 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 1.3e-12 77.4 162 29.0
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 1.3e-12 77.4 172 34.3
Actinidia30181 Actinidia chinensis HOM05D003438 ORTHO05D004235 8.2e-12 74.7 175 28.6
BcaC06g35156 Brassica carinata HOM05D003553 ORTHO05D005072 8.2e-12 74.7 66 54.5
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 1.8e-11 73.6 164 31.1
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 3.1e-11 72.8 179 30.2
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 6.9e-11 71.6 164 31.1
Cpa.g.sc570.4 Carica papaya HOM05D003438 ORTHO05D004235 9.0e-11 71.2 170 31.2
Gohir.D02G132532 Gossypium hirsutum HOM05D003438 ORTHO05D004235 9.0e-11 71.2 160 34.4
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 9.0e-11 71.2 160 34.4
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 1.2e-10 70.9 172 29.1
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 1.5e-10 70.5 156 34.6
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 2.0e-10 70.1 161 30.4
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 2.6e-10 69.7 177 24.9
Gohir.A03G107450 Gossypium hirsutum HOM05D003438 ORTHO05D004235 4.5e-10 68.9 160 33.8
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 4.5e-10 68.9 156 31.4
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 1.3e-09 67.4 184 27.2
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 1.7e-09 67.0 39 69.2
Nitab4.5_0000591g0090 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.2e-09 66.6 174 29.9
Carub.0002s1550 Capsella rubella HOM05D003438 ORTHO05D004235 2.9e-09 66.2 161 30.4
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 2.9e-09 66.2 208 25.5
CDE02G4531 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 3.8e-09 65.9 189 27.5
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 1.9e-08 63.5 155 30.3
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 5.5e-08 62.0 157 30.6


User provided reference genes

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