Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 0.0e+00 1123.2 588 100.0
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 6.9e-254 880.6 600 77.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 3.5e-250 868.2 597 77.1
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 9.6e-248 860.1 598 76.3
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 3.8e-244 848.2 601 75.4
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.9e-236 822.0 598 73.6
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 4.6e-234 814.7 598 72.6
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 8.8e-233 810.4 448 90.6
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.1e-226 789.3 447 89.3
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.8e-225 786.2 453 87.9
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.8e-225 786.2 453 87.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 8.2e-223 777.3 588 71.1
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.4e-217 760.0 444 84.0
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.8e-217 759.6 444 84.0
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 3.9e-217 758.4 448 83.0
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 5.2e-217 758.1 452 82.7
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 8.8e-217 757.3 448 83.3
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.1e-216 756.9 451 83.6
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.1e-216 756.9 448 83.0
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.1e-216 756.9 449 84.4
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.5e-216 756.5 451 84.9
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.3e-216 755.4 448 83.5
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.3e-215 753.4 447 83.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 2.8e-215 752.3 442 84.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.4e-214 750.0 455 81.8
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.1e-214 748.4 468 80.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.0e-214 747.7 472 79.0
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.2e-213 746.9 472 79.2
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.0e-213 746.1 469 79.1
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 5.9e-213 744.6 452 80.8
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 7.7e-213 744.2 445 81.6
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 7.7e-213 744.2 444 82.2
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.7e-212 743.0 438 83.6
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.8e-212 741.9 454 83.9
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-211 740.3 434 84.1
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.5e-211 739.2 446 80.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 2.5e-211 739.2 444 82.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.2e-211 738.8 444 82.2
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 7.2e-211 737.6 426 86.2
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 7.2e-211 737.6 451 81.4
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.2e-211 737.6 436 82.3
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.2e-210 736.9 606 66.3
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 3.6e-210 735.3 450 79.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 3.6e-210 735.3 450 78.9
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 6.1e-210 734.6 453 79.7
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 8.0e-210 734.2 450 78.7
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.4e-209 733.4 444 81.8
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.8e-209 733.0 425 83.8
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.0e-209 732.3 434 83.4
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.0e-209 732.3 455 79.8
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 4.0e-209 731.9 473 77.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.2e-208 730.3 455 79.6
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.6e-208 729.2 445 80.7
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.6e-208 729.2 490 77.6
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 4.4e-208 728.4 447 79.4
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 7.5e-208 727.6 450 79.1
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 9.7e-208 727.2 436 82.8
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.7e-207 726.5 437 81.9
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 8.3e-207 724.2 462 78.6
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.4e-206 723.4 467 77.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 7.0e-206 721.1 470 77.7
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.0e-205 719.5 448 80.1
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 5.9e-205 718.0 419 84.0
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.3e-204 716.8 419 84.0
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.9e-204 715.7 448 79.0
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.8e-204 715.3 444 80.2
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.0e-204 714.9 421 82.7
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 8.5e-204 714.1 448 78.1
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.5e-203 713.4 439 80.2
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.2e-203 712.2 426 82.2
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.2e-203 712.2 436 78.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 9.4e-203 710.7 431 81.2
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.2e-202 710.3 448 79.5
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.6e-202 709.9 487 74.1
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.1e-202 709.5 432 79.2
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 3.6e-202 708.8 426 81.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 4.7e-202 708.4 426 81.5
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 8.0e-202 707.6 448 78.1
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.4e-201 706.8 436 78.2
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.8e-201 706.4 426 81.7
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.8e-201 706.4 426 81.7
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 2.3e-201 706.1 485 73.0
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.0e-201 705.7 431 80.7
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.0e-201 705.3 421 82.2
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.5e-200 703.4 448 76.8
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.0e-200 703.0 421 81.9
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.6e-200 702.6 435 78.4
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.4e-200 702.2 451 77.2
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 7.5e-200 701.0 426 81.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 7.5e-200 701.0 434 78.8
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.3e-199 700.3 436 77.8
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.7e-199 699.9 433 78.3
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.7e-199 699.9 426 81.0
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.7e-199 699.9 439 77.9
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.1e-198 695.3 457 75.1
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 5.4e-198 694.9 438 77.6
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 5.4e-198 694.9 435 77.2
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.2e-197 693.7 476 74.2
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 3.5e-197 692.2 422 79.9
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 4.2e-195 685.3 450 74.9
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 9.5e-195 684.1 435 76.6
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 9.5e-195 684.1 554 65.2
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.2e-194 683.7 474 71.9
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 8.0e-194 681.0 431 76.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.3e-193 679.5 429 78.6
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.9e-193 677.6 420 77.1
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.4e-190 669.5 477 70.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 3.1e-190 669.1 447 74.3
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.6e-188 661.0 448 73.9
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 2.5e-187 659.4 444 75.0
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.6e-186 655.6 399 81.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.0e-185 654.1 481 67.8
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.4e-183 644.8 394 80.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.5e-179 632.9 465 67.3
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 5.2e-177 625.2 421 71.3
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-176 624.0 420 71.2
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 7.0e-174 614.8 464 65.5
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 9.5e-171 604.4 420 69.5
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 5.2e-169 598.6 362 80.7
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.1e-161 574.3 329 85.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.6e-146 522.7 327 78.6
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.2e-146 521.9 336 78.3
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 5.8e-144 515.4 426 60.8
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.5e-139 500.0 297 82.8
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 9.6e-139 498.0 430 62.8
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.4e-137 494.2 472 55.3
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.4e-137 494.2 425 59.3
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.8e-136 488.8 316 77.2
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.2e-133 481.1 291 82.8
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 3.3e-123 446.4 424 57.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 4.3e-123 446.0 272 79.0
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.8e-122 442.6 291 76.6
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.2e-114 417.2 262 79.0
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.0e-108 398.3 242 84.3
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.8e-108 397.5 427 46.4
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.8e-95 353.2 426 44.8
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-82 311.6 172 85.5
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.4e-74 282.7 345 44.6
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.6e-55 219.2 130 80.8
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.1e-52 210.7 178 65.2
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 3.0e-47 194.1 187 52.4
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.4e-44 185.3 125 75.2
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.8e-44 184.9 137 68.6
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 4.0e-44 183.7 119 71.4
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.3e-39 167.9 90 88.9
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 8.1e-37 159.5 153 56.9
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.2e-35 155.6 89 80.9
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 9.3e-25 119.4 78 70.5
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.7e-24 117.9 94 60.6
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.7e-24 117.9 94 60.6
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 8.7e-23 112.8 80 65.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-22 112.5 81 65.4
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 2.5e-22 111.3 80 65.0
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 9.6e-22 109.4 80 63.8
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 4.8e-21 107.1 77 63.6
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.4e-20 105.5 254 31.1
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.1e-17 95.9 53 86.8
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 4.6e-16 90.5 80 55.0
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.0e-15 89.4 124 41.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.0e-15 89.4 124 41.9
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.8e-15 88.6 82 59.8


User provided reference genes

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