Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G506 Trifolium pratense HOM05D000276 ORTHO05D004685 1.8e-14 81.3 37 100.0
Medtr8g464460 Medicago truncatula HOM05D000276 ORTHO05D004685 2.3e-14 80.9 37 97.3
Atru.chr1.4042 Acer truncatum HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Duzib168G2398 Durio zibethinus HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Duzib187G1428 Durio zibethinus HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Gohir.A06G077500 Gossypium hirsutum HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Gohir.A13G189800 Gossypium hirsutum HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Gohir.D06G076500 Gossypium hirsutum HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Gorai.010G089600 Gossypium raimondii HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Gorai.013G223200 Gossypium raimondii HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
QL05p003940 Quercus lobata HOM05D000276 ORTHO05D004685 5.1e-14 79.7 37 97.3
Nn1g00678 Nelumbo nucifera HOM05D000276 ORTHO05D004685 6.7e-14 79.3 37 94.6
Atru.chr7.1724 Acer truncatum HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
CANSAT80G1285 Cannabis sativa HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
Cfa003519 Carpinus fangiana HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
CiPaw.01G216900 Carya illinoinensis HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
ClCG09G001080 Citrullus lanatus HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
COL.COLO4_18079 Corchorus olitorius HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
Haze_16048 Corylus avellana HOM05D002249 ORTHO05D004685 1.1e-13 78.6 37 94.6
Manes.03G041500 Manihot esculenta HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
Nitab4.5_0000073g0160 Nicotiana tabacum HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
Nitab4.5_0010916g0010 Nicotiana tabacum HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
Sed0004763 Sechium edule HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
Sed0020903 Sechium edule HOM05D000276 ORTHO05D004685 1.1e-13 78.6 37 94.6
arahy.Tifrunner.gnm1.ann1.1W9MYV Arachis hypogaea HOM05D000276 ORTHO05D004685 1.5e-13 78.2 37 91.9
arahy.Tifrunner.gnm1.ann1.NTJB5Y Arachis hypogaea HOM05D000276 ORTHO05D004685 1.5e-13 78.2 37 91.9
ClCG07G014530 Citrullus lanatus HOM05D000276 ORTHO05D004685 1.5e-13 78.2 37 91.9
Nn6g33706 Nelumbo nucifera HOM05D000276 ORTHO05D004685 1.5e-13 78.2 37 91.9
Actinidia26018 Actinidia chinensis HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
MSTRG.14320 Avicennia marina HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
MSTRG.15122 Avicennia marina HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
CiPaw.02G134600 Carya illinoinensis HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
Ciclev10010323m.g Citrus clementina HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
MELO3C024343.2 Cucumis melo HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
Dinv37855 Davidia involucrata HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
Dinv42406 Davidia involucrata HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
Duzib150G0912 Durio zibethinus HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
PGR119G2314 Punica granatum HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
SalBow7G1398 Salvia bowleyana HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
Thecc.09G074900 Theobroma cacao HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
unitig_37.g12874 Utricularia gibba HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
GSVIVG01016731001 Vitis vinifera HOM05D000276 ORTHO05D004685 2.5e-13 77.4 37 91.9
CAN.G1661.16 Capsicum annuum HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 91.9
CsaV3_7G034340 Cucumis sativus L. HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 91.9
MD09G1179900 Malus domestica HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
MD17G1165500 Malus domestica HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
Manes.04G146500 Manihot esculenta HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
Oeu000283.1 Olea europaea HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
Sabra06G0086100 Salix brachista HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 91.9
Solyc12g009140.3 Solanum lycopersicum HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 91.9
Sopen12g004090 Solanum pennellii HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 91.9
PGSC0003DMG400002904 Solanum tuberosum HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 91.9
THA.LOC104808878 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
THA.LOC104815341 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
THA.LOC104826597 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 3.3e-13 77.0 37 89.2
Actinidia30231 Actinidia chinensis HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
Actinidia39648 Actinidia chinensis HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
Dinv20416 Davidia involucrata HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
ECA248G0714 Erigeron canadensis HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
Glyma.06G254200 Glycine max HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 91.9
Glyma.12G147200 Glycine max HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 91.9
HanXRQChr04g0094541 Helianthus annuus HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
Lj5A34T27 Lonicera japonica HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
Lj9A533G75 Lonicera japonica HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
TWI23G0762 Tripterygium wilfordii HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
TAR383G0186 Trochodendron aralioides HOM05D000276 ORTHO05D004685 5.7e-13 76.3 37 89.2
CSS0024147 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 86.5
Carub.0007s3134 Capsella rubella HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 89.2
Migut.A01118 Erythranthe guttata HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 89.2
Peaxi162Scf00928g00131 Petunia axillaris HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 91.9
Potri.006G110800 Populus trichocarpa HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 89.2
Potri.006G140400 Populus trichocarpa HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 89.2
Potri.016G139600 Populus trichocarpa HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 89.2
Prupe.3G038700 Prunus persica HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 86.5
Sabra06G0109600 Salix brachista HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 89.2
SHI46741 Sapria himalayana HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 86.5
Hund08823 Selenicereus undatus HOM05D000276 ORTHO05D004685 7.4e-13 75.9 37 91.9
AL3G43370 Arabidopsis lyrata HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
AT2G05840 Arabidopsis thaliana HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BcaB06g26863 Brassica carinata HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BcaC01g03135 Brassica carinata HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BcaC06g35940 Brassica carinata HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
A03p44820 Brassica napus HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
A07p06390 Brassica napus HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
C03p55710 Brassica napus HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
C07p09530 Brassica napus HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BolC3t17851H Brassica oleracea HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BolC7t41382H Brassica oleracea HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BraA03t13619Z Brassica rapa HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
BraA07t28432Z Brassica rapa HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
CARHR103470 Cardamine hirsuta HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
Thhalv10002649m.g Eutrema salsugineum HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
Lsat_1_v5_gn_1_37980 Lactuca sativa HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
Oeu007419.1 Olea europaea HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
Sp3g24290 Schrenkiella parvula HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 86.5
SGA_v2.0_scaffold34G13918 Striga asiatica HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 89.2
SGA_v2.0_scaffold70G23476 Striga asiatica HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 89.2
VMungo1127G1993 Vigna mungo HOM05D000276 ORTHO05D004685 1.3e-12 75.1 37 89.2
AL7G44410 Arabidopsis lyrata HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 86.5
AT5G35590 Arabidopsis thaliana HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 86.5
Ca_02932_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 89.2
Hma1.2p1_0686F.1_g203320 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 86.5
Hma1.2p1_2485F.1_g323070 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 86.5
Psat1g128160 Pisum sativum HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 89.2
Sc18g0002660 Simmondsia chinensis HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 89.2
TPR.G11723 Trifolium pratense HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 89.2
TWI14G0200 Tripterygium wilfordii HOM05D000276 ORTHO05D004685 1.7e-12 74.7 37 86.5
Ciclev10026352m.g Citrus clementina HOM05D000276 ORTHO05D004685 2.2e-12 74.3 37 89.2
Cc06_g12310 Coffea canephora HOM05D000276 ORTHO05D004685 2.2e-12 74.3 37 86.5
Os03g0180400 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D004685 2.2e-12 74.3 37 86.5
HPP92_016598 Vanilla planifolia HOM05D000276 ORTHO05D004685 2.2e-12 74.3 37 86.5
Zm00001eb005960 Zea mays HOM05D000276 ORTHO05D004685 2.2e-12 74.3 37 86.5
Zm00001eb401790 Zea mays HOM05D000276 ORTHO05D004685 2.2e-12 74.3 37 86.5
Aqoxy3G00422 Aquilegia oxysepala HOM05D000276 ORTHO05D004685 2.8e-12 73.9 37 86.5
BcaB08g34519 Brassica carinata HOM05D000276 ORTHO05D004685 2.8e-12 73.9 37 83.8
CDE02G1693 Ceratophyllum demersum HOM05D000276 ORTHO05D004685 2.8e-12 73.9 37 83.8
CDE05G0959 Ceratophyllum demersum HOM05D000276 ORTHO05D004685 2.8e-12 73.9 37 83.8
Ah.09g229270 Amaranthus hybridus HOM05D000276 ORTHO05D004685 3.7e-12 73.6 37 86.5
EL10Ac8g19042 Beta vulgaris HOM05D000276 ORTHO05D004685 3.7e-12 73.6 37 86.5
Lj3g0028021 Lotus japonicus HOM05D000276 ORTHO05D004685 3.7e-12 73.6 37 89.2
PSO135G0155 Papaver somniferum HOM05D000276 ORTHO05D004685 3.7e-12 73.6 37 83.8
PSO724G0707 Papaver somniferum HOM05D000276 ORTHO05D004685 3.7e-12 73.6 37 83.8
ATR0053G015 Amborella trichopoda HOM05D000276 ORTHO05D004685 4.8e-12 73.2 37 83.8
Eucgr.F04398 Eucalyptus grandis HOM05D000276 ORTHO05D004685 4.8e-12 73.2 37 86.5
Medtr2g060830 Medicago truncatula HOM05D000276 ORTHO05D004685 4.8e-12 73.2 37 86.5
Aqoxy7G04096 Aquilegia oxysepala HOM05D000276 ORTHO05D004685 8.2e-12 72.4 37 81.1
vmacro06348 Vaccinium macrocarpon HOM05D000276 ORTHO05D004685 8.2e-12 72.4 37 81.1
Rhsim03G0226900 Rhododendron simsii HOM05D000276 ORTHO05D004685 1.1e-11 72.0 37 78.4
Phvul.011G155200 Phaseolus vulgaris HOM05D000276 ORTHO05D004685 1.4e-11 71.6 37 86.5
AUR62025264 Chenopodium quinoa HOM05D000276 ORTHO05D004685 1.8e-11 71.2 37 83.8
AUR62028267 Chenopodium quinoa HOM05D000276 ORTHO05D004685 1.8e-11 71.2 37 83.8
Lalb_Chr19g0134491 Lupinus albus HOM05D000276 ORTHO05D004685 1.8e-11 71.2 37 81.1
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 3.1e-11 70.5 37 81.1
DCAR_016110 Daucus carota HOM05D000276 ORTHO05D004685 3.1e-11 70.5 37 81.1
MBI13_g00707_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004685 5.3e-11 69.7 37 78.4
Actinidia24720 Actinidia chinensis HOM05D000633 ORTHO05D004685 6.9e-11 69.3 39 82.1
FvH4_6g35040 Fragaria vesca HOM05D000276 ORTHO05D004685 9.1e-11 68.9 37 81.1
FAN02G3049 Fragaria x ananassa HOM05D000276 ORTHO05D004685 9.1e-11 68.9 37 81.1
FAN05G1250 Fragaria x ananassa HOM05D000276 ORTHO05D004685 9.1e-11 68.9 37 81.1
FAN09G1096 Fragaria x ananassa HOM05D000276 ORTHO05D004685 9.1e-11 68.9 37 81.1
FAN14G5418 Fragaria x ananassa HOM05D000276 ORTHO05D004685 9.1e-11 68.9 37 81.1
RcHm_v2.0_Chr2g0146201 Rosa chinensis HOM05D000276 ORTHO05D004685 9.1e-11 68.9 37 81.1
Psat2g031080 Pisum sativum HOM05D000276 ORTHO05D037357 4.5e-10 66.6 37 78.4
Psat4g153680 Pisum sativum HOM05D000276 ORTHO05D004685 1.3e-09 65.1 32 87.5
Lsat_1_v5_gn_7_53201 Lactuca sativa HOM05D000276 ORTHO05D004685 8.5e-09 62.4 37 75.7
CBR_g23123 Chara braunii HOM05D000276 ORTHO05D004685 1.4e-08 61.6 37 73.0
Mapoly0006s0307 Marchantia polymorpha HOM05D000276 ORTHO05D004685 1.4e-08 61.6 36 75.0
Pp3c8_24770 Physcomitrium patens HOM05D000276 ORTHO05D004685 1.4e-08 61.6 36 75.0
SMO348G0074 Selaginella moellendorffii HOM05D000276 ORTHO05D004685 2.5e-08 60.8 36 77.8
Cre17.g705400 Chlamydomonas reinhardtii HOM05D000276 ORTHO05D004685 3.2e-08 60.5 37 67.6
Pp3c23_21850 Physcomitrium patens HOM05D000276 ORTHO05D004685 4.2e-08 60.1 36 72.2
Hma1.2p1_0291F.1_g114895 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 5.5e-08 59.7 38 76.3
Pp3c7_22140 Physcomitrium patens HOM05D000276 ORTHO05D004685 5.5e-08 59.7 36 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2618 Anthoceros agrestis HOM05D000276 ORTHO05D004685 7.2e-08 59.3 36 72.2
Psat1g135520 Pisum sativum HOM05D001129 ORTHO05D037357 7.2e-08 59.3 31 80.6
Pp3c24_20680 Physcomitrium patens HOM05D000276 ORTHO05D004685 9.4e-08 58.9 36 75.0
Zm00001eb327410 Zea mays HOM05D000276 ORTHO05D004685 1.2e-07 58.5 36 61.1
Nn2g13545 Nelumbo nucifera HOM05D000276 ORTHO05D004685 2.7e-07 57.4 30 80.0
Psat0s3737g0120 Pisum sativum HOM05D000276 ORTHO05D037357 2.7e-07 57.4 31 77.4
AagrBONN_evm.TU.Sc2ySwM_117.2612 Anthoceros agrestis HOM05D000276 ORTHO05D004685 1.4e-06 55.1 35 68.6
PRCOL_00000811 Prasinoderma coloniale HOM05D000276 ORTHO05D004685 2.3e-06 54.3 37 56.8
Os07g0614100 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D004685 6.7e-06 52.8 37 56.8


User provided reference genes

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