Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 3.1e-116 421.8 210 100.0
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.7e-106 389.4 211 91.5
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.1e-104 382.5 210 88.6
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.1e-104 382.5 210 88.6
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 5.2e-103 377.9 214 89.7
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.0e-95 353.6 209 81.3
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.8e-95 352.8 210 80.0
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 4.4e-94 348.2 215 80.5
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 6.3e-93 344.4 212 80.2
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 4.1e-92 341.7 211 79.1
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 4.1e-92 341.7 211 78.7
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 5.4e-92 341.3 217 75.6
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 7.0e-92 340.9 210 77.1
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 2.7e-91 339.0 217 75.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 5.0e-90 334.7 216 74.5
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.3e-89 331.6 214 74.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 9.5e-89 330.5 214 74.8
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 9.5e-89 330.5 211 74.9
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.0e-88 327.4 211 73.0
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.4e-87 326.6 214 73.8
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.2e-86 323.6 211 72.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 4.4e-86 321.6 214 73.4
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 4.4e-86 321.6 214 73.4
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 5.8e-86 321.2 211 71.6
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 7.5e-86 320.9 214 72.9
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.7e-85 319.7 219 71.2
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 2.2e-85 319.3 214 74.3
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 2.2e-85 319.3 211 71.1
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 6.4e-85 317.8 214 72.4
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.9e-84 316.2 214 71.0
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.9e-84 316.2 213 72.3
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 4.1e-84 315.1 214 72.9
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 5.4e-84 314.7 211 74.9
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.4e-84 314.7 214 71.0
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 5.4e-84 314.7 212 71.7
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 5.4e-84 314.7 215 70.2
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.4e-84 314.7 220 70.5
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.6e-83 313.2 221 68.3
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.6e-83 313.2 214 72.0
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 3.5e-83 312.0 219 70.3
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 4.6e-83 311.6 209 71.3
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.0e-82 308.9 218 67.9
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 3.9e-82 308.5 216 72.2
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 6.6e-82 307.8 214 69.2
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 6.6e-82 307.8 214 72.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 8.6e-82 307.4 214 72.0
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 1.1e-81 307.0 221 66.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.5e-81 306.6 224 71.0
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 7.3e-81 304.3 226 70.4
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 7.3e-81 304.3 215 71.6
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.2e-80 303.5 209 71.3
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.2e-80 303.5 180 85.6
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.6e-80 303.1 218 67.0
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.6e-80 303.1 221 66.5
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.6e-80 303.1 217 70.5
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 3.6e-80 302.0 222 65.8
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 3.6e-80 302.0 222 65.8
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 4.7e-80 301.6 222 65.8
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.7e-80 301.6 214 71.0
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 4.7e-80 301.6 206 73.8
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 8.0e-80 300.8 212 69.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 8.0e-80 300.8 215 69.8
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 8.0e-80 300.8 217 70.0
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.1e-79 300.4 216 69.4
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.4e-79 300.1 214 68.2
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.4e-79 300.1 222 65.3
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.8e-79 299.7 214 67.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.3e-79 299.3 220 66.4
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 3.1e-79 298.9 222 65.3
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.1e-79 298.9 217 69.1
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 6.8e-79 297.7 204 69.6
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 8.9e-79 297.4 219 65.3
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.2e-78 297.0 214 69.2
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.2e-78 297.0 214 70.1
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 2.6e-78 295.8 222 64.9
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 2.6e-78 295.8 222 64.9
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 4.4e-78 295.0 215 68.8
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.8e-78 294.7 213 68.5
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 7.5e-78 294.3 214 68.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 7.5e-78 294.3 214 68.7
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 2.2e-77 292.7 198 72.7
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 4.9e-77 291.6 207 68.6
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.9e-77 291.6 215 66.0
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.1e-76 290.4 199 72.9
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 3.2e-76 288.9 220 64.1
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.1e-76 288.5 183 76.0
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 5.4e-76 288.1 204 72.1
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 5.4e-76 288.1 214 69.6
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 9.2e-76 287.3 189 72.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.6e-75 286.6 215 65.1
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.1e-75 286.2 212 66.5
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 6.0e-75 284.6 206 68.4
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 7.8e-75 284.3 202 71.3
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 2.3e-74 282.7 206 68.0
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 2.3e-74 282.7 216 64.4
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.3e-74 282.7 211 66.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 1.9e-73 279.6 214 67.3
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.9e-73 279.6 202 70.3
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.9e-73 279.6 205 64.9
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 4.3e-73 278.5 182 74.2
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.2e-72 276.9 214 64.5
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.2e-72 274.6 204 65.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 5.2e-71 271.6 214 63.6
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 8.9e-71 270.8 192 69.3
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.0e-70 269.6 193 65.3
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.6e-70 269.2 191 68.1
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 3.4e-70 268.9 213 60.1
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 4.4e-70 268.5 223 64.6
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 5.8e-70 268.1 216 62.5
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.8e-70 268.1 223 63.2
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 5.8e-70 268.1 249 57.4
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 7.5e-70 267.7 215 65.6
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.1e-68 261.9 204 63.7
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 3.9e-66 255.4 215 58.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.3e-65 251.1 256 55.1
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.3e-65 251.1 256 55.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 9.6e-65 250.8 191 62.8
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 6.2e-64 248.1 224 60.3
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.8e-63 246.5 190 64.7
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 4.0e-63 245.4 134 91.0
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 2.6e-62 242.7 191 63.9
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.4e-60 236.9 214 54.2
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.2e-60 235.3 144 75.0
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 4.6e-59 231.9 145 73.1
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.8e-55 219.9 146 74.7
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 5.8e-54 214.9 190 58.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 1.7e-50 203.4 138 67.4
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 5.1e-50 201.8 120 84.2
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-49 200.7 142 66.2
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 4.3e-49 198.7 150 68.7
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 4.8e-48 195.3 220 47.3
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.4e-46 189.1 211 46.4
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 8.4e-45 184.5 162 53.1
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.4e-44 183.7 146 66.4
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.9e-44 183.3 142 59.9
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 3.7e-40 169.1 126 65.1
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.2e-38 164.1 200 43.5
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.0e-37 161.0 107 71.0
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 9.3e-36 154.5 143 49.0
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 4.6e-35 152.1 198 40.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 6.7e-34 148.3 183 39.3
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.8e-31 140.2 76 88.2
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 9.0e-31 137.9 141 48.2
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.0e-29 134.4 211 42.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.0e-29 132.1 182 42.9
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-25 120.2 75 72.0
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 5.5e-20 102.1 155 38.7
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 9.4e-20 101.3 89 59.6
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.0e-18 97.8 73 64.4
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 3.3e-17 92.8 75 58.7
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 2.2e-16 90.1 63 66.7
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 6.3e-16 88.6 75 56.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.4e-15 86.7 66 68.2
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 6.9e-15 85.1 49 75.5
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 4.5e-14 82.4 69 55.1
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 2.2e-13 80.1 49 73.5
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 4.2e-12 75.9 48 72.9
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.8e-10 70.5 41 80.5
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 3.3e-09 66.2 47 63.8
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 4.8e-08 62.4 55 58.2
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 5.3e-07 58.9 44 63.6
CANSAT21G2006 Cannabis sativa HOM05D000285 ORTHO05D000241 9.1e-07 58.2 63 41.3
CANSAT21G0794 Cannabis sativa HOM05D000285 ORTHO05D000241 1.2e-06 57.8 63 41.3
CANSAT21G1045 Cannabis sativa HOM05D000285 ORTHO05D000241 1.2e-06 57.8 63 41.3
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 1.2e-06 57.8 74 35.1
CANSAT21G0705 Cannabis sativa HOM05D000285 ORTHO05D000241 2.6e-06 56.6 63 39.7
Os07g0124600 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 2.6e-06 56.6 84 34.5
CANSAT21G0598 Cannabis sativa HOM05D000285 ORTHO05D000241 3.5e-06 56.2 63 39.7
Carub.0003s0739 Capsella rubella HOM05D000285 ORTHO05D000241 3.5e-06 56.2 69 36.2
arahy.Tifrunner.gnm1.ann1.ES9RY0 Arachis hypogaea HOM05D000285 ORTHO05D000241 4.5e-06 55.8 78 33.3
HanXRQChr11g0324191 Helianthus annuus HOM05D000561 ORTHO05D000514 4.5e-06 55.8 75 30.7
Psat2g004080 Pisum sativum HOM05D000285 ORTHO05D000241 4.5e-06 55.8 69 36.2
Rhsim08G0090200 Rhododendron simsii HOM05D000285 ORTHO05D000241 4.5e-06 55.8 155 27.7
BcaC09g47949 Brassica carinata HOM05D000285 ORTHO05D000241 5.9e-06 55.5 85 32.9
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 5.9e-06 55.5 72 34.7
Lj6g0009677 Lotus japonicus HOM05D000142 ORTHO05D000124 5.9e-06 55.5 64 39.1
Medtr5g097580 Medicago truncatula HOM05D000285 ORTHO05D000241 5.9e-06 55.5 69 36.2
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 5.9e-06 55.5 33 75.8
Actinidia28085 Actinidia chinensis HOM05D000142 ORTHO05D010028 7.7e-06 55.1 73 37.0
CANSAT64G2520 Cannabis sativa HOM05D000285 ORTHO05D000241 7.7e-06 55.1 63 39.7
Migut.D02468 Erythranthe guttata HOM05D005326 ORTHO05D006734 7.7e-06 55.1 64 37.5
Prupe.6G216700 Prunus persica HOM05D000285 ORTHO05D000241 7.7e-06 55.1 64 40.6


User provided reference genes

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