Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4757 Trifolium pratense HOM05D000968 ORTHO05D001687 3.1e-51 204.9 110 100.0
Ca_09535_v3 Cicer arietinum L. HOM05D000968 ORTHO05D001687 7.3e-24 114.0 94 69.1
Glyma.03G260000 Glycine max HOM05D000968 ORTHO05D001687 4.1e-19 98.2 91 64.8
Psat3g001160 Pisum sativum HOM05D000968 ORTHO05D001687 2.3e-17 92.4 67 76.1
arahy.Tifrunner.gnm1.ann1.LU1UG8 Arachis hypogaea HOM05D000968 ORTHO05D001687 1.2e-15 86.7 105 54.3
Phvul.006G116400 Phaseolus vulgaris HOM05D000968 ORTHO05D001687 2.1e-15 85.9 67 74.6
VMungo0540G1037 Vigna mungo HOM05D000968 ORTHO05D001687 2.1e-15 85.9 67 74.6
Medtr7g118050 Medicago truncatula HOM05D000968 ORTHO05D001687 3.1e-14 82.0 46 93.5
Haze_15715 Corylus avellana HOM05D000968 ORTHO05D001687 1.2e-13 80.1 100 51.0
Lj1g0022533 Lotus japonicus HOM05D000968 ORTHO05D001687 9.9e-13 77.0 66 66.7
C09p01050 Brassica napus HOM05D000968 ORTHO05D001687 4.9e-12 74.7 95 49.5
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.4e-11 73.2 98 45.9
Lalb_Chr18g0044651 Lupinus albus HOM05D000968 ORTHO05D001687 1.9e-11 72.8 64 62.5
BolC9t53038H Brassica oleracea HOM05D000968 ORTHO05D001687 3.2e-11 72.0 95 48.4
Cpa.g.sc141.16 Carica papaya HOM05D000968 ORTHO05D001687 4.6e-10 68.2 66 60.6
Peaxi162Scf00191g01211 Petunia axillaris HOM05D000968 ORTHO05D001687 4.6e-10 68.2 92 51.1
Prupe.2G195700 Prunus persica HOM05D000968 ORTHO05D001687 4.6e-10 68.2 66 60.6
ATR0090G003 Amborella trichopoda HOM05D000968 ORTHO05D001687 6.0e-10 67.8 98 43.9
Cfa003751 Carpinus fangiana HOM05D000968 ORTHO05D001687 1.0e-09 67.0 66 60.6
MD01G1087100 Malus domestica HOM05D000968 ORTHO05D001687 2.3e-09 65.9 66 53.0
MBI04_g35564_MAGBIO Magnolia biondii HOM05D000968 ORTHO05D001687 5.1e-09 64.7 67 55.2
Gorai.001G151300 Gossypium raimondii HOM05D000968 ORTHO05D001687 1.1e-08 63.5 66 57.6
FAN01G2761 Fragaria x ananassa HOM05D000968 ORTHO05D001687 1.5e-08 63.2 66 54.5
FAN06G1418 Fragaria x ananassa HOM05D000968 ORTHO05D001687 1.5e-08 63.2 66 56.1
vmacro04296 Vaccinium macrocarpon HOM05D000968 ORTHO05D001687 1.5e-08 63.2 66 54.5
FvH4_7g17410 Fragaria vesca HOM05D000968 ORTHO05D001687 1.9e-08 62.8 66 56.1
FAN03G2978 Fragaria x ananassa HOM05D000968 ORTHO05D001687 1.9e-08 62.8 66 56.1
FAN06G4325 Fragaria x ananassa HOM05D000968 ORTHO05D001687 1.9e-08 62.8 66 56.1
Aa31LG5G1100 Aethionema arabicum HOM05D000968 ORTHO05D001687 2.5e-08 62.4 64 54.7
FAN10G3402 Fragaria x ananassa HOM05D000968 ORTHO05D001687 2.5e-08 62.4 66 54.5
Sp6g01280 Schrenkiella parvula HOM05D000968 ORTHO05D001687 2.5e-08 62.4 64 54.7
Ciclev10021463m.g Citrus clementina HOM05D000968 ORTHO05D001687 3.3e-08 62.0 66 57.6
Eucgr.E00018 Eucalyptus grandis HOM05D000968 ORTHO05D001687 3.3e-08 62.0 66 56.1
BcaC01g06830 Brassica carinata HOM05D000968 ORTHO05D001687 4.3e-08 61.6 64 56.2
Carub.0006s3586 Capsella rubella HOM05D000968 ORTHO05D001687 4.3e-08 61.6 60 61.7
Dinv34250 Davidia involucrata HOM05D000968 ORTHO05D001687 4.3e-08 61.6 43 69.8
Gohir.A07G134600 Gossypium hirsutum HOM05D000968 ORTHO05D001687 4.3e-08 61.6 66 56.1
vmacro13404 Vaccinium macrocarpon HOM05D000968 ORTHO05D001687 4.3e-08 61.6 63 60.3
Duzib138G0394 Durio zibethinus HOM05D000968 ORTHO05D001687 5.6e-08 61.2 66 56.1
Gohir.D07G139200 Gossypium hirsutum HOM05D000968 ORTHO05D001687 5.6e-08 61.2 66 56.1
Hma1.2p1_0309F.1_g120590 Hydrangea macrophylla HOM05D000968 ORTHO05D001687 5.6e-08 61.2 66 51.5
RcHm_v2.0_Chr1g0360851 Rosa chinensis HOM05D000968 ORTHO05D001687 5.6e-08 61.2 66 54.5
BcaB01g02310 Brassica carinata HOM05D000968 ORTHO05D001687 7.3e-08 60.8 64 54.7
MELO3C005582.2 Cucumis melo HOM05D000968 ORTHO05D001687 7.3e-08 60.8 66 54.5
Thecc.01G335200 Theobroma cacao HOM05D000968 ORTHO05D001687 7.3e-08 60.8 66 54.5
C03p38720 Brassica napus HOM05D000968 ORTHO05D001687 9.6e-08 60.5 64 54.7
BolC3t16146H Brassica oleracea HOM05D000968 ORTHO05D001687 9.6e-08 60.5 64 54.7
ClCG01G003630 Citrullus lanatus HOM05D000968 ORTHO05D001687 9.6e-08 60.5 66 54.5
AL6G52620 Arabidopsis lyrata HOM05D000968 ORTHO05D001687 1.3e-07 60.1 64 53.1
A03p31690 Brassica napus HOM05D000968 ORTHO05D001687 1.3e-07 60.1 64 56.2
BraA03t12347Z Brassica rapa HOM05D000968 ORTHO05D001687 1.3e-07 60.1 64 56.2
Thhalv10028856m.g Eutrema salsugineum HOM05D000968 ORTHO05D001687 1.3e-07 60.1 64 51.6
Manes.05G017900 Manihot esculenta HOM05D000968 ORTHO05D001687 1.3e-07 60.1 66 51.5
Sed0010951 Sechium edule HOM05D000968 ORTHO05D001687 1.3e-07 60.1 66 56.1
TWI14G0952 Tripterygium wilfordii HOM05D000968 ORTHO05D001687 1.3e-07 60.1 75 52.0
AT4G00840 Arabidopsis thaliana HOM05D000968 ORTHO05D001687 1.6e-07 59.7 64 53.1
CSS0021619 Camellia sinensis var. sinensis HOM05D000968 ORTHO05D001687 2.1e-07 59.3 66 47.0
HanXRQChr04g0120001 Helianthus annuus HOM05D000968 ORTHO05D001687 2.1e-07 59.3 66 51.5
CARHR249490 Cardamine hirsuta HOM05D000968 ORTHO05D001687 2.8e-07 58.9 64 53.1
PGR042G0809 Punica granatum HOM05D000968 ORTHO05D001687 3.6e-07 58.5 106 40.6
BcaC04g24101 Brassica carinata HOM05D000968 ORTHO05D001687 4.8e-07 58.2 64 51.6
CsaV3_5G003750 Cucumis sativus L. HOM05D000968 ORTHO05D001687 4.8e-07 58.2 66 51.5
BraA09t35767Z Brassica rapa HOM05D000968 ORTHO05D001687 8.1e-07 57.4 64 51.6
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 8.1e-07 57.4 63 58.7
A09p00970 Brassica napus HOM05D000968 ORTHO05D001687 1.1e-06 57.0 64 51.6
PSO782G1614 Papaver somniferum HOM05D000968 ORTHO05D001687 1.4e-06 56.6 43 62.8
Sed0021405 Sechium edule HOM05D000968 ORTHO05D001687 1.4e-06 56.6 63 57.1
Aqoxy5G04333 Aquilegia oxysepala HOM05D000968 ORTHO05D001687 2.4e-06 55.8 64 51.6
MELO3C005989.2 Cucumis melo HOM05D000968 ORTHO05D001687 2.4e-06 55.8 64 57.8
Cfa001734 Carpinus fangiana HOM05D000968 ORTHO05D001687 3.1e-06 55.5 63 54.0
CsaV3_3G007680 Cucumis sativus L. HOM05D000968 ORTHO05D001687 3.1e-06 55.5 64 57.8
Gohir.D09G189200 Gossypium hirsutum HOM05D000968 ORTHO05D001687 3.1e-06 55.5 63 52.4
ClCG05G000510 Citrullus lanatus HOM05D000968 ORTHO05D001687 4.0e-06 55.1 64 56.2
Lalb_Chr12g0208221 Lupinus albus HOM05D000968 ORTHO05D001687 4.0e-06 55.1 63 54.0
Nn1g00410 Nelumbo nucifera HOM05D000968 ORTHO05D001687 4.0e-06 55.1 64 53.1
Potri.014G104000 Populus trichocarpa HOM05D000968 ORTHO05D001687 4.0e-06 55.1 66 51.5
Rhsim07G0027900 Rhododendron simsii HOM05D000968 ORTHO05D001687 4.0e-06 55.1 63 54.0
Potri.001G117100 Populus trichocarpa HOM05D000968 ORTHO05D001687 5.3e-06 54.7 63 50.8
Hund16742 Selenicereus undatus HOM05D000968 ORTHO05D001687 5.3e-06 54.7 66 48.5
BcaC02g10186 Brassica carinata HOM05D000968 ORTHO05D001687 6.9e-06 54.3 64 54.7
C04p31800 Brassica napus HOM05D000968 ORTHO05D001687 6.9e-06 54.3 64 54.7
BolC4t24728H Brassica oleracea HOM05D000968 ORTHO05D001687 6.9e-06 54.3 64 54.7
Haze_16803 Corylus avellana HOM05D000968 ORTHO05D001687 6.9e-06 54.3 67 50.7
PGR031G2686 Punica granatum HOM05D000968 ORTHO05D001687 6.9e-06 54.3 63 52.4
QL08p053414 Quercus lobata HOM05D000968 ORTHO05D001687 6.9e-06 54.3 63 54.0
Solyc05g047640.3 Solanum lycopersicum HOM05D000968 ORTHO05D001687 6.9e-06 54.3 66 48.5
Sopen05g027920 Solanum pennellii HOM05D000968 ORTHO05D001687 6.9e-06 54.3 66 48.5
Gohir.D12G104800 Gossypium hirsutum HOM05D000968 ORTHO05D001687 9.0e-06 53.9 63 54.0
Gorai.008G114100 Gossypium raimondii HOM05D000968 ORTHO05D001687 9.0e-06 53.9 63 54.0
Potri.003G115600 Populus trichocarpa HOM05D000968 ORTHO05D001687 9.0e-06 53.9 63 49.2
TAR636G3387 Trochodendron aralioides HOM05D000968 ORTHO05D001687 9.0e-06 53.9 63 54.0


User provided reference genes

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